; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg20107 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20107
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionIsoleucyl-tRNA synthetase
Genome locationCarg_Chr14:12097218..12097942
RNA-Seq ExpressionCarg20107
SyntenyCarg20107
Gene Ontology termsGO:0006428 - isoleucyl-tRNA aminoacylation (biological process)
GO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0002161 - aminoacyl-tRNA editing activity (molecular function)
GO:0004822 - isoleucine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002300 - Aminoacyl-tRNA synthetase, class Ia
IPR009008 - Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582211.1 Isoleucine--tRNA ligase, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.2e-4879.07Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

KAG7018611.1 Isoleucine--tRNA ligase, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-74100Show/hide
Query:  MMMRDSEELGPYIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSL
        MMMRDSEELGPYIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSL
Subjt:  MMMRDSEELGPYIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSL

Query:  ILEESYGKAFTFQLISSQFRTRDEQFVLRTSSELGFRSPS
        ILEESYGKAFTFQLISSQFRTRDEQFVLRTSSELGFRSPS
Subjt:  ILEESYGKAFTFQLISSQFRTRDEQFVLRTSSELGFRSPS

XP_008438885.1 PREDICTED: isoleucine--tRNA ligase, chloroplastic/mitochondrial [Cucumis melo]3.8e-4878.29Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLP+ISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

XP_022956209.1 isoleucine--tRNA ligase, chloroplastic/mitochondrial [Cucurbita moschata]2.2e-4879.07Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

XP_023527875.1 isoleucine--tRNA ligase, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]2.2e-4879.07Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

TrEMBL top hitse value%identityAlignment
A0A1S3AY52 Isoleucyl-tRNA synthetase1.8e-4878.29Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLP+ISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

A0A5A7U5N1 Isoleucyl-tRNA synthetase7.3e-4583.33Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLP+ISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSL     +G   +
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQF
          L   ++
Subjt:  FQLISSQF

A0A5D3D0J5 Isoleucyl-tRNA synthetase3.3e-4597.78Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLI
        YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLP+ISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSL+
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLI

A0A6J1GYE1 Isoleucyl-tRNA synthetase1.1e-4879.07Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

A0A6J1IX89 Isoleucyl-tRNA synthetase2.0e-4777.52Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        YIHPI+KRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEE Y   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

SwissProt top hitse value%identityAlignment
B2IZP5 Isoleucine--tRNA ligase5.2e-3253.49Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        Y HP+  RE  +V+GGDYITTE+GTGLVHTAPGHGQEDY  G +YGLP+++PVDD+G FT+EAG+F+GL+VLGDGN AV+  L    SL+ EE Y   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

B7K5H5 Isoleucine--tRNA ligase4.4e-3153.49Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        Y HP+  RE ++VIGGDY+TTE+GTGLVHTAPGHGQEDY  G +YGL ++SPVDD G FTEEAGQFSGL+VL D N A++  L +  SL+ EE Y   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

B7KFT1 Isoleucine--tRNA ligase2.6e-3151.16Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        Y HP+  RE +++IGGDY+TTE+GTGLVHTAPGHGQEDY  G +YGLP++SPVD+ G FT EAGQF+GL+VL D N A++K L++  +L+ EE Y   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

Q8RXK8 Isoleucine--tRNA ligase, chloroplastic/mitochondrial1.0e-4366.15Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        Y HPID R+C VVIGGDYITTE+GTGLVHTAPGHGQEDYATGLKYGLPL+SPVDD+GKFTEEAGQF GL VLG+GNTAVV YLD++ SL++EESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFRS
        +   + +   FR  ++ F    +S  GFR+
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFRS

Q8YXY3 Isoleucine--tRNA ligase2.8e-3355.04Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        Y HP+  RE  VV+GGDYITTE+GTGLVHTAPGHGQEDY  GL+YGLP+++PVDD+G FT+EAGQF+GL+VLG+GN AV+  L    SL+ EE+Y   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFR
        +   + +   FR  ++ F    +S  GFR
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFR

Arabidopsis top hitse value%identityAlignment
AT4G10320.1 tRNA synthetase class I (I, L, M and V) family protein2.2e-0936.17Show/hide
Query:  VIGGDYITTETGTGLVHTAPGHGQEDYATGL-----KYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFTF
        V+  DY+T ++GTG+VH AP  G++DY   L     K G  L+  VDDDG FTE    FSG  V  D +  +++ +     L+   S+  ++ F
Subjt:  VIGGDYITTETGTGLVHTAPGHGQEDYATGL-----KYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFTF

AT5G16715.1 ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases7.7e-0736.21Show/hide
Query:  VIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLD
        +I   Y+  + GTG++  +PGH   DY    K GLP+++ ++ D    + AG F GLD
Subjt:  VIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLD

AT5G49030.1 tRNA synthetase class I (I, L, M and V) family protein7.2e-4566.15Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        Y HPID R+C VVIGGDYITTE+GTGLVHTAPGHGQEDYATGLKYGLPL+SPVDD+GKFTEEAGQF GL VLG+GNTAVV YLD++ SL++EESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFRS
        +   + +   FR  ++ F    +S  GFR+
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFRS

AT5G49030.2 tRNA synthetase class I (I, L, M and V) family protein7.2e-4566.15Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        Y HPID R+C VVIGGDYITTE+GTGLVHTAPGHGQEDYATGLKYGLPL+SPVDD+GKFTEEAGQF GL VLG+GNTAVV YLD++ SL++EESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFRS
        +   + +   FR  ++ F    +S  GFR+
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFRS

AT5G49030.3 tRNA synthetase class I (I, L, M and V) family protein7.2e-4566.15Show/hide
Query:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT
        Y HPID R+C VVIGGDYITTE+GTGLVHTAPGHGQEDYATGLKYGLPL+SPVDD+GKFTEEAGQF GL VLG+GNTAVV YLD++ SL++EESY   + 
Subjt:  YIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAFT

Query:  FQLISSQ---FRTRDEQFVLRTSSELGFRS
        +   + +   FR  ++ F    +S  GFR+
Subjt:  FQLISSQ---FRTRDEQFVLRTSSELGFRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATGAGGGACAGTGAAGAACTGGGACCATATATCCACCCAATTGATAAGAGGGAGTGCCAAGTTGTTATTGGAGGAGATTACATTACAACTGAGACAGGAACTGG
GTTGGTCCATACGGCTCCTGGACATGGTCAGGAGGATTATGCGACTGGTTTGAAGTATGGACTCCCCCTAATATCTCCTGTAGATGATGATGGAAAATTCACCGAAGAAG
CTGGGCAATTCAGCGGGCTTGATGTACTTGGGGATGGCAATACGGCTGTTGTCAAATATTTGGATGATCATTTCTCACTTATTTTGGAAGAATCGTACGGTAAGGCGTTC
ACCTTCCAGTTGATTTCCTCGCAATTCAGGACTCGGGATGAGCAGTTCGTGCTGAGGACTTCCAGTGAACTGGGCTTTCGCTCGCCTTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATGAGGGACAGTGAAGAACTGGGACCATATATCCACCCAATTGATAAGAGGGAGTGCCAAGTTGTTATTGGAGGAGATTACATTACAACTGAGACAGGAACTGG
GTTGGTCCATACGGCTCCTGGACATGGTCAGGAGGATTATGCGACTGGTTTGAAGTATGGACTCCCCCTAATATCTCCTGTAGATGATGATGGAAAATTCACCGAAGAAG
CTGGGCAATTCAGCGGGCTTGATGTACTTGGGGATGGCAATACGGCTGTTGTCAAATATTTGGATGATCATTTCTCACTTATTTTGGAAGAATCGTACGGTAAGGCGTTC
ACCTTCCAGTTGATTTCCTCGCAATTCAGGACTCGGGATGAGCAGTTCGTGCTGAGGACTTCCAGTGAACTGGGCTTTCGCTCGCCTTCCTAA
Protein sequenceShow/hide protein sequence
MMMRDSEELGPYIHPIDKRECQVVIGGDYITTETGTGLVHTAPGHGQEDYATGLKYGLPLISPVDDDGKFTEEAGQFSGLDVLGDGNTAVVKYLDDHFSLILEESYGKAF
TFQLISSQFRTRDEQFVLRTSSELGFRSPS