CuGenDBv2

Gene ID	Carg20109
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	40S ribosomal protein S21
Genome location	Carg_Chr14:12106463..12115335
RNA-Seq Expression	Carg20109
Synteny	Carg20109
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR001931 - Ribosomal protein S21e IPR038579 - Ribosomal protein S21e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582215.1 40S ribosomal protein S21-1, partial [Cucurbita argyrosperma subsp. sororia]

9.1e-30

98.55

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Query:  SSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQQKI
        +SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQQKI
Subjt:  SSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQQKI

KAG7018613.1 40S ribosomal protein S21-1, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-31

100

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Query:  MAISSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQQKI
        MAISSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQQKI
Subjt:  MAISSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQQKI

XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]

2.8e-26

93.85

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLWQKKK+EV QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

1.2e-26

93.85

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLW KKK+EVHQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]

2.8e-26

92.31

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGF+RAQGDADSA+DRLW KKK+EVHQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7W3 40S ribosomal protein S21

1.3e-26

93.85

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLWQKKK+EV QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

A0A1S4DSM1 40S ribosomal protein S21

1.3e-26

93.85

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLWQKKK+EV QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

A0A5D3CXC9 40S ribosomal protein S21

1.3e-26

93.85

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLWQKKK+EV QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

A0A6J1GFE6 40S ribosomal protein S21

6.0e-27

93.85

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLW KKK+EVHQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

A0A6J1IJN4 40S ribosomal protein S21

1.3e-26

92.31

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGF+RAQGDADSA+DRLW KKK+EVHQQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

1.2e-24

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GF+RAQGDADSA+DRLWQK+K EV QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

Q3E902 40S ribosomal protein S21-2

2.2e-26

85.94

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQ
        SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+E  Q
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQ

Q41852 40S ribosomal protein S21

1.7e-23

78.12

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQ
        SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS++DRLWQKKK E+ Q
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQ

Q54BN4 40S ribosomal protein S21

3.9e-15

65.52

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKK
        SATNRLIT+KDHASVQINIGH++  GIY G+ + FA CGFLR  G +D+A++RL Q+K
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKK

Q9M337 40S ribosomal protein S21-1

1.3e-26

84.62

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+E  QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

9.1e-28

84.62

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+E  QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

AT3G53890.2 Ribosomal protein S21e

9.1e-28

84.62

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ
        SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+E  QQ
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQ

AT5G27700.1 Ribosomal protein S21e

1.6e-27

85.94

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Query:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQ
        SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+E  Q
Subjt:  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQ

Sequences

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CDS sequence

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ATGGCAATTTCCTCCGCAACGAATCGATTGATTACTTCCAAGGACCATGCTTCCGTCCAGATTAACATTGGGCATTTGGATGAAAATGGCATCTACACTGGCCAGTTTTC
CACTTTTGCTCTCTGTGGTTTCCTTCGGGCACAGGGAGATGCCGACAGTGCAGTGGATCGGCTCTGGCAGAAGAAGAAACTCGAAGTTCATCAACAACAGAAGATTTAG

mRNA sequence

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Protein sequence

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MAISSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQQKI

Carg20109 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome