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Carg20146 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20146
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChromatin structure-remodeling complex protein SYD isoform X1
Genome locationCarg_Chr14:12293162..12294451
RNA-Seq ExpressionCarg20146
SyntenyCarg20146
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0048856 - anatomical structure development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0042393 - histone binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582248.1 Chromatin structure-remodeling complex protein SYD, partial [Cucurbita argyrosperma subsp. sororia]2.5e-4485.47Show/hide
Query:  VWKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--
        +WKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  
Subjt:  VWKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--

Query:  TSQSKAINPRHRLVVES
        +   + +  +H L +E+
Subjt:  TSQSKAINPRHRLVVES

KAG6597487.1 Chromatin structure-remodeling complex protein SYD, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2675.56Show/hide
Query:  HHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES
        HHQL +SSRIS+QVA+LD+MAS+QNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + +  +H L +E+
Subjt:  HHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES

KAG7018650.1 Chromatin structure-remodeling complex protein SYD, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-93100Show/hide
Query:  MSGWAVSHLGPNRRRFSKWAETRLFSHVGSVWKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRD
        MSGWAVSHLGPNRRRFSKWAETRLFSHVGSVWKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRD
Subjt:  MSGWAVSHLGPNRRRFSKWAETRLFSHVGSVWKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRD

Query:  EPAKLATKLYVILQHMKSSGKEHSMPYQTSQSKAINPRHRLVVESPFLSDHISDRRAFIAFDHNILDFGAKGGPTS
        EPAKLATKLYVILQHMKSSGKEHSMPYQTSQSKAINPRHRLVVESPFLSDHISDRRAFIAFDHNILDFGAKGGPTS
Subjt:  EPAKLATKLYVILQHMKSSGKEHSMPYQTSQSKAINPRHRLVVESPFLSDHISDRRAFIAFDHNILDFGAKGGPTS

KAG7028948.1 Chromatin structure-remodeling complex protein SYD, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2863.41Show/hide
Query:  FSHVGSVWKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHS
        + HVG   K QFH P EG               HHQL +SSRIS+QVA+LD+MAS+QNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHS
Subjt:  FSHVGSVWKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHS

Query:  MPYQ--TSQSKAINPRHRLVVES
        MPYQ  +   + +  +H L +E+
Subjt:  MPYQ--TSQSKAINPRHRLVVES

TYK16113.1 chromatin structure-remodeling complex protein SYD isoform X1 [Cucumis melo var. makuwa]1.9e-2073.17Show/hide
Query:  RISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES
        R+   V ILDKMA+SQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + +  +H L +E+
Subjt:  RISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES

TrEMBL top hitse value%identityAlignment
A0A0A0L8X3 Uncharacterized protein2.0e-2359.84Show/hide
Query:  SVWKTQFHRPVEGLAISSE--------SKTRVLHVVHHQLTISSRISYQ-VAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSG
        S W+TQ HR +EGL ISSE        S +     V     +  R  +  VAILDKMA+SQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSG
Subjt:  SVWKTQFHRPVEGLAISSE--------SKTRVLHVVHHQLTISSRISYQ-VAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSG

Query:  KEHSMPYQ--TSQSKAINPRHRLVVES
        KEHSMPYQ  +   + +  +H L +E+
Subjt:  KEHSMPYQ--TSQSKAINPRHRLVVES

A0A445AX47 HSA domain-containing protein1.5e-1881.54Show/hide
Query:  SSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ
        SS +S +  ILD+MASSQNVELEAA FLH+LIQ S+DEPAKLATKL+VILQHMKSSGKEHSMPYQ
Subjt:  SSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ

A0A4D6KPB8 ATP-dependent helicase STH1/SNF21.1e-1873.97Show/hide
Query:  DKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES
        D+MASSQNVELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + +  +H L +E+
Subjt:  DKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES

A0A5A7U2G7 Chromatin structure-remodeling complex protein SYD isoform X19.2e-2173.17Show/hide
Query:  RISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES
        R+   V ILDKMA+SQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + +  +H L +E+
Subjt:  RISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES

A0A5D3CW67 Chromatin structure-remodeling complex protein SYD isoform X19.2e-2173.17Show/hide
Query:  RISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES
        R+   V ILDKMA+SQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ  +   + +  +H L +E+
Subjt:  RISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ--TSQSKAINPRHRLVVES

SwissProt top hitse value%identityAlignment
F4IHS2 Chromatin structure-remodeling complex protein SYD3.5e-1784.31Show/hide
Query:  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ
        +SS N+ELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMK+SGKE++MPYQ
Subjt:  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ

Arabidopsis top hitse value%identityAlignment
AT2G28290.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.5e-1884.31Show/hide
Query:  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ
        +SS N+ELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMK+SGKE++MPYQ
Subjt:  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ

AT2G28290.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.5e-1884.31Show/hide
Query:  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ
        +SS N+ELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMK+SGKE++MPYQ
Subjt:  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ

AT2G28290.3 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.5e-1884.31Show/hide
Query:  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ
        +SS N+ELEAAKFLHKLIQ+S+DEPAKLATKLYVILQHMK+SGKE++MPYQ
Subjt:  ASSQNVELEAAKFLHKLIQESRDEPAKLATKLYVILQHMKSSGKEHSMPYQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGATGGGCAGTTTCACATCTGGGCCCAAACCGACGACGTTTCAGTAAATGGGCCGAAACCCGATTATTTTCTCACGTGGGAAGCGTGTGGAAAACACAGTTCCA
TCGTCCTGTCGAGGGCTTGGCAATTTCTTCAGAATCTAAAACCAGAGTTCTCCATGTAGTTCATCATCAGCTTACAATTTCTTCGCGGATCTCGTATCAGGTTGCTATCT
TAGACAAGATGGCATCTTCACAAAATGTTGAGCTGGAAGCTGCGAAGTTTCTGCACAAACTCATTCAAGAATCTAGAGACGAGCCAGCAAAATTGGCTACAAAACTCTAC
GTGATATTGCAACACATGAAATCAAGTGGGAAAGAACATTCAATGCCGTATCAAACTAGCCAATCCAAAGCGATCAACCCAAGGCATAGACTTGTCGTGGAAAGTCCTTT
TCTTTCCGACCATATTTCAGATAGGAGAGCTTTCATTGCATTTGACCACAATATCTTAGATTTTGGCGCCAAGGGAGGGCCAACTAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGATGGGCAGTTTCACATCTGGGCCCAAACCGACGACGTTTCAGTAAATGGGCCGAAACCCGATTATTTTCTCACGTGGGAAGCGTGTGGAAAACACAGTTCCA
TCGTCCTGTCGAGGGCTTGGCAATTTCTTCAGAATCTAAAACCAGAGTTCTCCATGTAGTTCATCATCAGCTTACAATTTCTTCGCGGATCTCGTATCAGGTTGCTATCT
TAGACAAGATGGCATCTTCACAAAATGTTGAGCTGGAAGCTGCGAAGTTTCTGCACAAACTCATTCAAGAATCTAGAGACGAGCCAGCAAAATTGGCTACAAAACTCTAC
GTGATATTGCAACACATGAAATCAAGTGGGAAAGAACATTCAATGCCGTATCAAACTAGCCAATCCAAAGCGATCAACCCAAGGCATAGACTTGTCGTGGAAAGTCCTTT
TCTTTCCGACCATATTTCAGATAGGAGAGCTTTCATTGCATTTGACCACAATATCTTAGATTTTGGCGCCAAGGGAGGGCCAACTAGCTAA
Protein sequenceShow/hide protein sequence
MSGWAVSHLGPNRRRFSKWAETRLFSHVGSVWKTQFHRPVEGLAISSESKTRVLHVVHHQLTISSRISYQVAILDKMASSQNVELEAAKFLHKLIQESRDEPAKLATKLY
VILQHMKSSGKEHSMPYQTSQSKAINPRHRLVVESPFLSDHISDRRAFIAFDHNILDFGAKGGPTS