; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg20148 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20148
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionserine/arginine-rich SC35-like splicing factor SCL28
Genome locationCarg_Chr14:12320580..12325208
RNA-Seq ExpressionCarg20148
SyntenyCarg20148
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0007283 - spermatogenesis (biological process)
GO:0030154 - cell differentiation (biological process)
GO:0030261 - chromosome condensation (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000221 - Protamine P1
IPR000504 - RNA recognition motif domain
IPR003954 - RNA recognition motif domain, eukaryote
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018652.1 Serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita argyrosperma subsp. argyrosperma]6.3e-117100Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRA
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRA
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRA

Query:  VDIARSRSRSPRAASRSPSGSRSRSYSPR
        VDIARSRSRSPRAASRSPSGSRSRSYSPR
Subjt:  VDIARSRSRSPRAASRSPSGSRSRSYSPR

XP_022955785.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita moschata]3.4e-10285.48Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR   +    SS+  + A                    S SRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        RRDYSRSPTPKENGRSPRAVD ARSRSRSPRAASRSPSGSRSRSYSPR
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

XP_022979912.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita maxima]4.0e-10386.29Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR   +    SS+  + A                    S SRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

XP_023527505.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucurbita pepo subsp. pepo]1.2e-10285.89Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR   +    SS+  + A                    S SRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRS+SPR
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

XP_038878233.1 serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida]2.9e-9883.47Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        M RYRSRSRSYSPRRRSRTPPRGRKR+DDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRW------------------QKQQKAFSSKVS-ATAISLSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR                   +++ +++S   S A   S SRGAR+EYLSPARSRSISRS SPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRW------------------QKQQKAFSSKVS-ATAISLSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        RRDYSRSPTPKENGRSPR VD ARSRSRSPRA SRSPSGSRSRSYSPR
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

TrEMBL top hitse value%identityAlignment
A0A1S3AXW0 serine/arginine-rich SC35-like splicing factor SCL287.1e-9882.66Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRW------------------QKQQKAFSSKVS-ATAISLSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR                   +++ +++S   S A   S SRGARDEYLSPARSRSIS S SPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRW------------------QKQQKAFSSKVS-ATAISLSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        R+DYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGSRSRSYSPR
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

A0A5D3CXM8 Serine/arginine-rich SC35-like splicing factor SCL281.7e-9682.45Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRW------------------QKQQKAFSSKVS-ATAISLSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR                   +++ +++S   S A   S SRGARDEYLSPARSRSIS S SPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRW------------------QKQQKAFSSKVS-ATAISLSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSY
        R+DYSRSPTPK+NGRSPR VD ARSRSRSP+  SRSPSGSRSRSY
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSY

A0A6J1C7W4 serine/arginine-rich SC35-like splicing factor SCL285.6e-9581.05Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLDARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRW------------------QKQQKAFSSKVS-ATAISLSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR                   +++ +++S   S A   S +RGARDEYLSPARSRSISRS SP D
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRW------------------QKQQKAFSSKVS-ATAISLSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        RRDYSRSP+PKENGRSPR VDI RSRSRS RA SRSPSGSRS+SYSPR
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

A0A6J1GW11 serine/arginine-rich SC35-like splicing factor SCL281.6e-10285.48Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MA+YRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR   +    SS+  + A                    S SRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        RRDYSRSPTPKENGRSPRAVD ARSRSRSPRAASRSPSGSRSRSYSPR
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

A0A6J1IQ05 serine/arginine-rich SC35-like splicing factor SCL281.9e-10386.29Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD
        AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMR   +    SS+  + A                    S SRGARDEYLSPARSRSISRSHSPRD
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATA-------------------ISLSRGARDEYLSPARSRSISRSHSPRD

Query:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
Subjt:  RRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

SwissProt top hitse value%identityAlignment
O75494 Serine/arginine-rich splicing factor 102.8e-1941.53Show/hide
Query:  PAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFS
        P  + L VRN+  D R EDLR  F R+GP+ DVY+P ++YT  PRGF +V+F    DA +A   L+   I GR+I I FA+ +RKTP +M+ ++ +  +S
Subjt:  PAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFS

Query:  SKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRRDYS-RSPTPKENGRSPRA-VDIARSRSRSPRAASRSPSGSRSRSYS
           S+      R  R    S  R RS SRS     RR YS R+  P    R  R+  D  R + R+ R+ SRS S SRSRS S
Subjt:  SKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRRDYS-RSPTPKENGRSPRA-VDIARSRSRSPRAASRSPSGSRSRSYS

Q1PDV2 Serine/arginine-rich SC35-like splicing factor SCL281.8e-5056.68Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLDARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRS------------HSPRDR-RDYSR
        AEDAAEA +++NH VIGGREI IVFAEENRKTPQEMR              T+    R  R  Y S +RSRS  R             +SPR R R  SR
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRS------------HSPRDR-RDYSR

Query:  SPTPK-------ENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        SP P+        N RSPR       R  +P   SR  S SRSRS S
Subjt:  SPTPK-------ENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS

Q8L3X8 Serine/arginine-rich SC35-like splicing factor SCL301.2e-3040.75Show/hide
Query:  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQ
        YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PFERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ 
Subjt:  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQ

Query:  LNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPR-------DRRDYSRSPTPKENGRSPRAVD-
        +N     GREI +V A E+RK P+EMR + + ++              G+RD     +RSRSISRS SPR         R  S SP P+  G  PR  + 
Subjt:  LNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPR-------DRRDYSRSPTPKENGRSPRAVD-

Query:  ------------------------------------IARSRSRSPRAASRSPSGSRSRS--YSPR
                                             A  R R  RA SRSPSGSRSRS   SPR
Subjt:  ------------------------------------IARSRSRSPRAASRSPSGSRSRS--YSPR

Q9LHP2 Serine/arginine-rich SC35-like splicing factor SCL30A3.4e-3345.45Show/hide
Query:  RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA
        R RSY+P     +PPR  GR+     PR R+  SR      S  P+ LLVRNL  D R EDLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DA
Subjt:  RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA

Query:  AEAKQQLNHTVIGGREIRIVFAEENRKTPQEM----------RWQKQQKA---FSSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRR---DYSRS
        AEAK Q++  ++ GRE+ +VFAEENRK P EM          R+Q ++++   +S          SR     Y SP   R  SRS SP+DRR   + S S
Subjt:  AEAKQQLNHTVIGGREIRIVFAEENRKTPQEM----------RWQKQQKA---FSSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRR---DYSRS

Query:  PTPKENGRSPRAVDIAR--SRSRSPRAASRSPSGSRSRSYSP
         +P  NG   R+    R  S SRSPR   RS S  ++RSY+P
Subjt:  PTPKENGRSPRAVDIAR--SRSRSPRAASRSPSGSRSRSYSP

Q9SEU4 Serine/arginine-rich SC35-like splicing factor SCL338.5e-3244.22Show/hide
Query:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE
        R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDLR  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+
Subjt:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE

Query:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQ------------QKAFS-SKVSATAISLSRGARDEYLSPARSRSISRSHSPRD-----RRDYSRS
        AK  ++  ++ GRE+ +VFAEENRK P EMR +++             + +S S+        SR    +Y SP   R   RS SPR+     RR YSRS
Subjt:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQ------------QKAFS-SKVSATAISLSRGARDEYLSPARSRSISRSHSPRD-----RRDYSRS

Query:  P----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        P          TP        +    RS SRSPR  SRSPS  R+RS SPR
Subjt:  P----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 336.0e-3344.22Show/hide
Query:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE
        R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDLR  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+
Subjt:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE

Query:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQ------------QKAFS-SKVSATAISLSRGARDEYLSPARSRSISRSHSPRD-----RRDYSRS
        AK  ++  ++ GRE+ +VFAEENRK P EMR +++             + +S S+        SR    +Y SP   R   RS SPR+     RR YSRS
Subjt:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQ------------QKAFS-SKVSATAISLSRGARDEYLSPARSRSISRSHSPRD-----RRDYSRS

Query:  P----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR
        P          TP        +    RS SRSPR  SRSPS  R+RS SPR
Subjt:  P----------TPKENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYSPR

AT1G55310.2 SC35-like splicing factor 334.3e-3144.35Show/hide
Query:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE
        R RSY+P     +PPRG  R    P  R R     RD     P+ LLVRNL  D R EDLR  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+
Subjt:  RSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE

Query:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGA---RDEYLSPARSRSISRSHSPRDRRDYSRSP---TPKENGRSPRA
        AK  ++  ++ GRE+ +VFAEENRK P EMR                 +  RG    RD   +P R  S SRS  PR  R  SRS    +P      PR+
Subjt:  AKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGA---RDEYLSPARSRSISRSHSPRDRRDYSRSP---TPKENGRSPRA

Query:  VDIARSRSRSPRAASRSPS--GSRSRSYSP
        +     R    R+ SRSP+  GSR RS +P
Subjt:  VDIARSRSRSPRAASRSPS--GSRSRSYSP

AT3G13570.1 SC35-like splicing factor 30A2.4e-3445.45Show/hide
Query:  RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA
        R RSY+P     +PPR  GR+     PR R+  SR      S  P+ LLVRNL  D R EDLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DA
Subjt:  RSRSYSPRRRSRTPPR--GRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDA

Query:  AEAKQQLNHTVIGGREIRIVFAEENRKTPQEM----------RWQKQQKA---FSSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRR---DYSRS
        AEAK Q++  ++ GRE+ +VFAEENRK P EM          R+Q ++++   +S          SR     Y SP   R  SRS SP+DRR   + S S
Subjt:  AEAKQQLNHTVIGGREIRIVFAEENRKTPQEM----------RWQKQQKA---FSSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRR---DYSRS

Query:  PTPKENGRSPRAVDIAR--SRSRSPRAASRSPSGSRSRSYSP
         +P  NG   R+    R  S SRSPR   RS S  ++RSY+P
Subjt:  PTPKENGRSPRAVDIAR--SRSRSPRAASRSPSGSRSRSYSP

AT3G55460.1 SC35-like splicing factor 308.7e-3240.75Show/hide
Query:  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQ
        YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PFERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ 
Subjt:  YSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQ

Query:  LNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPR-------DRRDYSRSPTPKENGRSPRAVD-
        +N     GREI +V A E+RK P+EMR + + ++              G+RD     +RSRSISRS SPR         R  S SP P+  G  PR  + 
Subjt:  LNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPR-------DRRDYSRSPTPKENGRSPRAVD-

Query:  ------------------------------------IARSRSRSPRAASRSPSGSRSRS--YSPR
                                             A  R R  RA SRSPSGSRSRS   SPR
Subjt:  ------------------------------------IARSRSRSPRAASRSPSGSRSRS--YSPR

AT5G18810.1 SC35-like splicing factor 281.3e-5156.68Show/hide
Query:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF
        MAR RSRSRSYSPR R R+PPR RK YDD   +R RE  S RD  S  PSGLL+RNLPLDARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+
Subjt:  MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRF

Query:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRS------------HSPRDR-RDYSR
        AEDAAEA +++NH VIGGREI IVFAEENRKTPQEMR              T+    R  R  Y S +RSRS  R             +SPR R R  SR
Subjt:  AEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRS------------HSPRDR-RDYSR

Query:  SPTPK-------ENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS
        SP P+        N RSPR       R  +P   SR  S SRSRS S
Subjt:  SPTPK-------ENGRSPRAVDIARSRSRSPRAASRSPSGSRSRSYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGGTACCGAAGCCGGAGTAGAAGTTACAGCCCTCGTCGGCGTAGCCGAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGCTACCGCGA
AAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTGCGTAATCTCCCCCTTGATGCTAGGCCGGAAGATCTTAGGATCCCGTTCGAGCGTTTTG
GTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGGAGCCCCGAGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGCAGCTGAAGCAAAACAACAA
CTGAATCATACGGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCACAAGAAATGCGTTGGCAGAAGCAGCAGAAGGCGTTCTCCAG
CAAGGTCTCCGCGACGGCGATATCATTGAGCCGTGGGGCCAGGGATGAGTATCTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGG
ATTATAGCCGATCTCCAACTCCGAAGGAGAATGGTCGGAGCCCTCGTGCAGTGGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCATCTGGT
TCTCGTTCACGTTCCTATAGTCCTCGCTGA
mRNA sequenceShow/hide mRNA sequence
TTTGAAGCGTAGGGTTTAGGTTATGATTTATCGATAGCGCTCTCATCTCCCTCTCCCCTTCCCAAACATTCGAATCATTTTCCCAAATCTCCCTAGGGTTAGGGTTTTCT
CTGTTTCTTTCGCGTGATTTTCGTTTGCAGGTACTCGAGGAGACGCAAACAATCCACTATGGCGAGGTACCGAAGCCGGAGTAGAAGTTACAGCCCTCGTCGGCGTAGCC
GAACCCCACCACGAGGGCGGAAGCGGTACGACGACGACCCTAGAGACCGCTACCGCGAAAGCAGGTCTCATAGGGACCGTCGCTCTCCTGCTCCTTCTGGGTTACTCGTG
CGTAATCTCCCCCTTGATGCTAGGCCGGAAGATCTTAGGATCCCGTTCGAGCGTTTTGGTCCTGTTAAGGATGTGTATCTTCCGAAAAACTACTACACTGGGGAGCCCCG
AGGGTTTGGGTTTGTGAAGTTTCGGTTTGCAGAAGATGCAGCTGAAGCAAAACAACAACTGAATCATACGGTTATAGGTGGACGGGAGATACGAATTGTGTTTGCTGAGG
AGAACAGGAAAACTCCACAAGAAATGCGTTGGCAGAAGCAGCAGAAGGCGTTCTCCAGCAAGGTCTCCGCGACGGCGATATCATTGAGCCGTGGGGCCAGGGATGAGTAT
CTCTCTCCTGCACGATCTAGATCAATTTCACGTTCTCATTCCCCTCGTGATAGAAGGGATTATAGCCGATCTCCAACTCCGAAGGAGAATGGTCGGAGCCCTCGTGCAGT
GGACATTGCACGCAGTAGGTCAAGGAGTCCAAGGGCTGCTAGCCGCAGTCCATCTGGTTCTCGTTCACGTTCCTATAGTCCTCGCTGATGGATGTGTTTCGGGATCGTCC
TCGAGATTTGTTAGTCTGCCTTCCGTTATGGCCAGATGAACTTTGCTATTCCATGCTATGCAAGCTTCTGTAAGGAAATTTTATTTATATGTGAAAGTTGGGAGGCGGGA
CTTGAGTTGTGGGTTGAAGAACAATGAGTGTAGTCTTGCTGTTTTTCAAAGTAGTTAACTTCATGTGAGTGCATGCTCTGGTGGACTTCTACTTGACAACCTTTCCTAGA
TTTAGATTTTTGGGGTTCAGTGGATTTCGTTTATACTCTTGTATATGTCTAGTGGTTGTATTTGG
Protein sequenceShow/hide protein sequence
MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLDARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQ
LNHTVIGGREIRIVFAEENRKTPQEMRWQKQQKAFSSKVSATAISLSRGARDEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSG
SRSRSYSPR