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Carg20156 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20156
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSpoU_methylase domain-containing protein
Genome locationCarg_Chr14:12370159..12372712
RNA-Seq ExpressionCarg20156
SyntenyCarg20156
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049420.1 putative TrmH family tRNA/rRNA methyltransferase [Cucumis melo var. makuwa]5.8e-1468.12Show/hide
Query:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHSLLDAQ+FL+
Subjt:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE

KAG6582257.1 hypothetical protein SDJN03_22259, partial [Cucurbita argyrosperma subsp. sororia]2.2e-6999.26Show/hide
Query:  RIEIYVAWRSLTTPVAVKNRCSSWQRGFLLKSMQSVTSSFTSHTKDNHLEKVQDLINYAHCRQKSKQPIKMVKGEIKFNSQVMKHFKVSVAPAKENFTTA
        RIEIYVAWRSLTTPV VKNRCSSWQRGFLLKSMQSVTSSFTSHTKDNHLEKVQDLINYAHCRQKSKQPIKMVKGEIKFNSQVMKHFKVSVAPAKENFTTA
Subjt:  RIEIYVAWRSLTTPVAVKNRCSSWQRGFLLKSMQSVTSSFTSHTKDNHLEKVQDLINYAHCRQKSKQPIKMVKGEIKFNSQVMKHFKVSVAPAKENFTTA

Query:  RLKLISLAVGGISIDSHMTCCCLKDQRGNLANPQII
        RLKLISLAVGGISIDSHMTCCCLKDQRGNLANPQII
Subjt:  RLKLISLAVGGISIDSHMTCCCLKDQRGNLANPQII

XP_004134172.1 uncharacterized protein LOC101214849 [Cucumis sativus]5.8e-1468.12Show/hide
Query:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHSLLDAQ+FL+
Subjt:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE

XP_008438758.1 PREDICTED: putative TrmH family tRNA/rRNA methyltransferase [Cucumis melo]7.6e-1468.12Show/hide
Query:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHSLLDAQ+FL+
Subjt:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE

XP_038877345.1 putative TrmH family tRNA/rRNA methyltransferase [Benincasa hispida]9.9e-1466.67Show/hide
Query:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        MGIESYV++HN+AK         S  AFG SEL+LVG  DFNAFG+H ST H RFRHFHSLLDAQSFL+
Subjt:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE

TrEMBL top hitse value%identityAlignment
A0A0A0LAH1 SpoU_methylase domain-containing protein2.8e-1468.12Show/hide
Query:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHSLLDAQ+FL+
Subjt:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE

A0A1S3AXA1 putative TrmH family tRNA/rRNA methyltransferase3.7e-1468.12Show/hide
Query:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHSLLDAQ+FL+
Subjt:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE

A0A218WMV6 uncharacterized protein LOC1162092932.4e-1365.22Show/hide
Query:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        M +ESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHSLLDA+SFL+
Subjt:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE

A0A5A7U267 Putative TrmH family tRNA/rRNA methyltransferase2.8e-1468.12Show/hide
Query:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        MGIESYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHSLLDAQ+FL+
Subjt:  MGIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE

A0A6J1C999 uncharacterized protein LOC1110093982.4e-1366.18Show/hide
Query:  GIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        GI+SYVV+HN+AK         S  AFG SELILVG  DFNAFG+H ST H RFRHFHSLLDAQ+FL+
Subjt:  GIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G15520.1 tRNA/rRNA methyltransferase (SpoU) family protein2.1e-1457.35Show/hide
Query:  GIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE
        G ESYVV+HN+AK         S  AFG +ELILVG  DFNAFG+H S  H RFRHFHSL++A+++L+
Subjt:  GIESYVVMHNVAK---------SVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATCGAAAGCTACGTTGTGATGCATAACGTAGCCAAAAGTGTCATCGCCTTCGGTGCATCGGAGCTCATCCTCGTCGGCTGTTGGGATTTTAACGCCTTTGGTAA
CCATGATTCCACTTTTCATCGCCGGTTCCGCCATTTTCACTCCCTTCTCGATGCCCAAAGTTTTCTCGAGGTTATGCCCTTTTTGTTTCTTCCCTTAAGTAGTCTCAATT
TGACAATAGGTTTAGTTTTGAAATTTGAATTGCCTTCTTATGTTCTGAGGATTGAGATATATGTGGCGTGGAGATCATTGACAACGCCTGTGGCTGTCAAAAATCGCTGT
TCTTCTTGGCAACGAGGCTTTCTGCTGAAGAGCATGCAATCTGTGACTTCTTCATTTACTTCCCACACTAAGGACAACCACCTGGAGAAAGTTCAAGATTTGATCAACTA
TGCTCATTGTCGCCAGAAATCAAAGCAACCTATAAAGATGGTGAAAGGAGAGATTAAATTCAACTCACAAGTGATGAAACATTTCAAAGTTTCTGTTGCACCTGCCAAGG
AAAACTTCACCACAGCTAGACTCAAACTGATAAGTTTGGCTGTTGGTGGCATCTCCATTGATTCCCACATGACTTGCTGTTGTCTCAAAGATCAAAGGGGAAACTTAGCC
AATCCCCAGATTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATCGAAAGCTACGTTGTGATGCATAACGTAGCCAAAAGTGTCATCGCCTTCGGTGCATCGGAGCTCATCCTCGTCGGCTGTTGGGATTTTAACGCCTTTGGTAA
CCATGATTCCACTTTTCATCGCCGGTTCCGCCATTTTCACTCCCTTCTCGATGCCCAAAGTTTTCTCGAGGTTATGCCCTTTTTGTTTCTTCCCTTAAGTAGTCTCAATT
TGACAATAGGTTTAGTTTTGAAATTTGAATTGCCTTCTTATGTTCTGAGGATTGAGATATATGTGGCGTGGAGATCATTGACAACGCCTGTGGCTGTCAAAAATCGCTGT
TCTTCTTGGCAACGAGGCTTTCTGCTGAAGAGCATGCAATCTGTGACTTCTTCATTTACTTCCCACACTAAGGACAACCACCTGGAGAAAGTTCAAGATTTGATCAACTA
TGCTCATTGTCGCCAGAAATCAAAGCAACCTATAAAGATGGTGAAAGGAGAGATTAAATTCAACTCACAAGTGATGAAACATTTCAAAGTTTCTGTTGCACCTGCCAAGG
AAAACTTCACCACAGCTAGACTCAAACTGATAAGTTTGGCTGTTGGTGGCATCTCCATTGATTCCCACATGACTTGCTGTTGTCTCAAAGATCAAAGGGGAAACTTAGCC
AATCCCCAGATTATTTAA
Protein sequenceShow/hide protein sequence
MGIESYVVMHNVAKSVIAFGASELILVGCWDFNAFGNHDSTFHRRFRHFHSLLDAQSFLEVMPFLFLPLSSLNLTIGLVLKFELPSYVLRIEIYVAWRSLTTPVAVKNRC
SSWQRGFLLKSMQSVTSSFTSHTKDNHLEKVQDLINYAHCRQKSKQPIKMVKGEIKFNSQVMKHFKVSVAPAKENFTTARLKLISLAVGGISIDSHMTCCCLKDQRGNLA
NPQII