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Carg20164 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20164
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiondiphthamide biosynthesis protein 3-like
Genome locationCarg_Chr11:8306658..8309579
RNA-Seq ExpressionCarg20164
SyntenyCarg20164
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0017183 - peptidyl-diphthamide biosynthetic process from peptidyl-histidine (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007872 - DPH-type metal-binding domain
IPR036671 - DPH-type metal-binding domain superfamily
IPR044248 - Diphthamide biosynthesis protein 3/4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022429.1 DPH3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-66100Show/hide
Query:  MCDTRVQRTQIPITLTQSSSSTSEFVGCRLAIAAKLAESSEPTMSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIY
        MCDTRVQRTQIPITLTQSSSSTSEFVGCRLAIAAKLAESSEPTMSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIY
Subjt:  MCDTRVQRTQIPITLTQSSSSTSEFVGCRLAIAAKLAESSEPTMSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIY

Query:  NMEDFLGDSVQKNNTGLEPSKQRPAVVA
        NMEDFLGDSVQKNNTGLEPSKQRPAVVA
Subjt:  NMEDFLGDSVQKNNTGLEPSKQRPAVVA

XP_008454889.1 PREDICTED: diphthamide biosynthesis protein 3-like [Cucumis melo]5.0e-3992.94Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DS QKNN GLEPSKQ P VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA

XP_022931585.1 diphthamide biosynthesis protein 3-like [Cucurbita moschata]7.5e-43100Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA

XP_022972367.1 diphthamide biosynthesis protein 3-like [Cucurbita maxima]2.3e-3992.94Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDS  KNN GL+PSKQ+P VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA

XP_038887330.1 diphthamide biosynthesis protein 3-like [Benincasa hispida]2.7e-4095.29Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDS QKNN GLEPSKQ+P VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA

TrEMBL top hitse value%identityAlignment
A0A1S3BZL5 diphthamide biosynthesis protein 3-like2.4e-3992.94Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DS QKNN GLEPSKQ P VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA

A0A5A7SJN1 Diphthamide biosynthesis protein 3-like2.4e-3992.94Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDM+WNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL DS QKNN GLEPSKQ P VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA

A0A6J1C519 diphthamide biosynthesis protein 3-like5.4e-3989.41Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDMEWN+ELQA+TYPCPCGDLFQITKEDL+LGEEIARCPSCSLYITVIYNMEDFLGDS QKNN G++PSKQ+P VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA

A0A6J1EZW6 diphthamide biosynthesis protein 3-like3.6e-43100Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA

A0A6J1I4L9 diphthamide biosynthesis protein 3-like1.1e-3992.94Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDS  KNN GL+PSKQ+P VVA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA

SwissProt top hitse value%identityAlignment
Q1LZC9 DPH3 homolog4.3e-1752.7Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF-LGDSVQKNNTGLE
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F  G++V   +T  E
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDF-LGDSVQKNNTGLE

Q21102 DPH3 homolog3.3e-1759.02Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL
        +D+VEIED E++EE   + YPCPCGD F+I +E L++GE++A+CPSCSL I VIY+ EDF+
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL

Q6CMG4 Diphthamide biosynthesis protein 33.3e-1754.67Show/hide
Query:  SYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEP
        +YD+VEIEDM ++ + Q FTYPCPCGD FQI+ +D+  GE+IA CPSCSL I V+++ ED +   V+ N   LEP
Subjt:  SYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEP

Q6VUC1 DPH3 homolog8.7e-1852.7Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL-GDSVQKNNTGLE
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+ G++V   +T  E
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL-GDSVQKNNTGLE

Q8K0W9 DPH3 homolog1.1e-1752.7Show/hide
Query:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL-GDSVQKNNTGLE
        +D+VEIED +++E+ + + YPCPCGD F ITKEDL+ GE++A CPSCSL I VIY+ + F+ G++V   +T  E
Subjt:  YDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFL-GDSVQKNNTGLE

Arabidopsis top hitse value%identityAlignment
AT2G15910.1 CSL zinc finger domain-containing protein8.9e-3480.25Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRP
        MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF  D+ +KNN   EP  + P
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRP

AT2G15910.2 CSL zinc finger domain-containing protein1.0e-3478.82Show/hide
Query:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA
        MSYDDVEIEDMEWNEE+QA+TYPCPCGDLFQITKEDL+LGEEIA CPSCSLYITVIYNMEDF  D+ +KNN   EP  + P  VA
Subjt:  MSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSVQKNNTGLEPSKQRPAVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGACACAAGAGTCCAAAGAACCCAAATCCCTATAACCCTTACTCAATCTTCTTCGTCTACCTCCGAATTCGTCGGTTGCAGACTCGCCATCGCCGCCAAATTAGC
CGAATCCTCCGAACCAACGATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGTGGCGACTTGTTCC
AGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTT
CAGAAGAATAACACAGGACTTGAGCCTTCTAAACAACGGCCTGCCGTTGTCGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGACACAAGAGTCCAAAGAACCCAAATCCCTATAACCCTTACTCAATCTTCTTCGTCTACCTCCGAATTCGTCGGTTGCAGACTCGCCATCGCCGCCAAATTAGC
CGAATCCTCCGAACCAACGATGTCGTACGATGACGTGGAGATAGAAGACATGGAGTGGAACGAGGAGCTGCAGGCCTTCACGTACCCATGCCCCTGTGGCGACTTGTTCC
AGATCACGAAGGAGGATCTTAAGCTCGGCGAAGAGATTGCTCGGTGCCCTAGCTGCTCTCTTTACATCACTGTCATCTACAACATGGAAGATTTTCTCGGAGACTCTGTT
CAGAAGAATAACACAGGACTTGAGCCTTCTAAACAACGGCCTGCCGTTGTCGCTTAA
Protein sequenceShow/hide protein sequence
MCDTRVQRTQIPITLTQSSSSTSEFVGCRLAIAAKLAESSEPTMSYDDVEIEDMEWNEELQAFTYPCPCGDLFQITKEDLKLGEEIARCPSCSLYITVIYNMEDFLGDSV
QKNNTGLEPSKQRPAVVA