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Carg20168 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20168
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein indeterminate-domain 16
Genome locationCarg_Chr11:157303..157803
RNA-Seq ExpressionCarg20168
SyntenyCarg20168
Gene Ontology termsGO:0009630 - gravitropism (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR039288 - Zinc finger protein SHOOT GRAVITROPISM 5-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008464429.1 PREDICTED: protein indeterminate-domain 16 [Cucumis melo]5.5e-7090.59Show/hide
Query:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLEPGQ-GSVDLQLSISLRPIRP-AAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAA
        MEDEDQKELQLLPTPHSIASSS   SSRPSDSSLRFRSD  E G  GSVDLQLSISLRPIRP  AG ECL KYEEVMKPEA SCVEALKWQA EQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLEPGQ-GSVDLQLSISLRPIRP-AAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP
        MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERM+ERATRQ+DSTCMEITCQSCRQRFRP
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP

XP_022930039.1 protein indeterminate-domain 14-like [Cucurbita moschata]1.8e-81100Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY
        MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY
Subjt:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY

Query:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRPC
        AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRPC
Subjt:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRPC

XP_023006854.1 protein indeterminate-domain 14-like [Cucurbita maxima]3.2e-7898.18Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY
        MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEP QGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEA SCVEALKWQAGEQIRLAAMEKAY
Subjt:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY

Query:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP
        AERVRELTKREIELAQTEFARARQMWERAREEVEKAER RERATRQVDSTCMEITCQSCRQRFRP
Subjt:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP

XP_023531717.1 protein indeterminate-domain 14-like [Cucurbita pepo subsp. pepo]3.2e-7897.58Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY
        MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEA SCVEALKWQAGEQIRLAAMEKAY
Subjt:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY

Query:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP
        AERVRELTKREIELAQTEFARARQ+WERAREEVEKAERMRERA+ QVDSTCMEITCQSCRQRFRP
Subjt:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP

XP_038878928.1 protein indeterminate-domain 16 [Benincasa hispida]9.4e-7091.12Show/hide
Query:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLE-PGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAM
        MEDEDQKELQLLPTPHSIASSS   SSRPSDSSLRFRSD  E  G GSVDLQLSISLRPIRPA  AECL KYEEVMKPEA SCVEALKWQA EQIRLAAM
Subjt:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLE-PGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAM

Query:  EKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP
        EKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERM+ERATRQ+DSTCMEITCQSCRQRFRP
Subjt:  EKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP

TrEMBL top hitse value%identityAlignment
A0A1S3CN02 protein indeterminate-domain 162.7e-7090.59Show/hide
Query:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLEPGQ-GSVDLQLSISLRPIRP-AAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAA
        MEDEDQKELQLLPTPHSIASSS   SSRPSDSSLRFRSD  E G  GSVDLQLSISLRPIRP  AG ECL KYEEVMKPEA SCVEALKWQA EQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLEPGQ-GSVDLQLSISLRPIRP-AAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP
        MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERM+ERATRQ+DSTCMEITCQSCRQRFRP
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP

A0A5A7UWD1 Protein indeterminate-domain 167.7e-7090Show/hide
Query:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLEPGQ-GSVDLQLSISLRPIRP-AAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAA
        MEDEDQKELQLLPTPHSIASSS   SSRPSDSSLRFRSD  E G  GSVDLQLSISLRPIRP  AG ECL KYEEVMKPEA SCVEALKWQA EQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLEPGQ-GSVDLQLSISLRPIRP-AAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP
        +EKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERM+ERATRQ+DSTCMEITCQSCRQRFRP
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP

A0A5D3BFD1 Protein indeterminate-domain 162.7e-7090.59Show/hide
Query:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLEPGQ-GSVDLQLSISLRPIRP-AAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAA
        MEDEDQKELQLLPTPHSIASSS   SSRPSDSSLRFRSD  E G  GSVDLQLSISLRPIRP  AG ECL KYEEVMKPEA SCVEALKWQA EQIRLAA
Subjt:  MEDEDQKELQLLPTPHSIASSS---SSRPSDSSLRFRSDLLEPGQ-GSVDLQLSISLRPIRP-AAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAA

Query:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP
        MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERM+ERATRQ+DSTCMEITCQSCRQRFRP
Subjt:  MEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP

A0A6J1EQH1 protein indeterminate-domain 14-like8.8e-82100Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY
        MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY
Subjt:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY

Query:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRPC
        AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRPC
Subjt:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRPC

A0A6J1L3B7 protein indeterminate-domain 14-like1.6e-7898.18Show/hide
Query:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY
        MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEP QGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEA SCVEALKWQAGEQIRLAAMEKAY
Subjt:  MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAY

Query:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP
        AERVRELTKREIELAQTEFARARQMWERAREEVEKAER RERATRQVDSTCMEITCQSCRQRFRP
Subjt:  AERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP

SwissProt top hitse value%identityAlignment
F4IPE3 Zinc finger protein SHOOT GRAVITROPISM 59.6e-0940.51Show/hide
Query:  AGEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR
        A EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ ++E++ +++ ST M++TCQ+C+ +F+
Subjt:  AGEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR

Q9C9X7 Protein indeterminate-domain 142.1e-0836.62Show/hide
Query:  RPSDSSLRFRSDLLEP--GQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAYAERVRELTKREIELAQTEFARA
        R S  S +  S LL P    GS++LQ    L P R  A    L      M  +  S VE   ++ GE     ++E+   E  R  TKR+IE+A+ EFA A
Subjt:  RPSDSSLRFRSDLLEP--GQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAYAERVRELTKREIELAQTEFARA

Query:  RQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR
        +++ + AR E+ KA   RE A+R++ +T M+ITC +C+Q F+
Subjt:  RQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR

Q9FRH4 Protein indeterminate-domain 162.4e-0736.36Show/hide
Query:  SVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERA
        S++LQLSI +   R +A A    K E  +  E          +A E+ R        AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  +RE A
Subjt:  SVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERA

Query:  TRQVDSTCMEITCQSCRQRFR
         +++++T MEITC SC+Q F+
Subjt:  TRQVDSTCMEITCQSCRQRFR

Arabidopsis top hitse value%identityAlignment
AT1G68130.1 indeterminate(ID)-domain 141.5e-0936.62Show/hide
Query:  RPSDSSLRFRSDLLEP--GQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAYAERVRELTKREIELAQTEFARA
        R S  S +  S LL P    GS++LQ    L P R  A    L      M  +  S VE   ++ GE     ++E+   E  R  TKR+IE+A+ EFA A
Subjt:  RPSDSSLRFRSDLLEP--GQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAYAERVRELTKREIELAQTEFARA

Query:  RQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR
        +++ + AR E+ KA   RE A+R++ +T M+ITC +C+Q F+
Subjt:  RQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR

AT2G01940.1 C2H2-like zinc finger protein6.8e-1040.51Show/hide
Query:  AGEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR
        A EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ ++E++ +++ ST M++TCQ+C+ +F+
Subjt:  AGEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR

AT2G01940.2 C2H2-like zinc finger protein6.8e-1040.51Show/hide
Query:  AGEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR
        A EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ ++E++ +++ ST M++TCQ+C+ +F+
Subjt:  AGEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR

AT2G01940.3 C2H2-like zinc finger protein6.8e-1040.51Show/hide
Query:  AGEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR
        A EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ ++E++ +++ ST M++TCQ+C+ +F+
Subjt:  AGEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFR

AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3)4.4e-3353.57Show/hide
Query:  EDEDQKELQLLPTPHSIASS-SSSRPSDSSLRFRSDLLEPG---QGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAME
        + +  KELQLLP+P S  S     RP+  +    ++           +DL+LSISL  I  A         EE+  P  G  VEALKWQA EQIRLAA+E
Subjt:  EDEDQKELQLLPTPHSIASS-SSSRPSDSSLRFRSDLLEPG---QGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAME

Query:  KAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP
        KAYAERVRELT+RE+E+AQ+EFARAR MW++AREEVE+AER++ER+  ++D+ C+EITC SCRQRFRP
Subjt:  KAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACTCCATAGCGTCCTCCTCCTCCTCCCGTCCATCCGACTCGTCGTTACGATTCCGATCCGATCT
ATTGGAACCGGGGCAAGGATCCGTGGACCTGCAATTGTCGATAAGCCTGAGGCCAATCCGGCCGGCGGCGGGGGCGGAGTGCTTGTTGAAGTACGAGGAGGTGATGAAGC
CGGAGGCGGGGAGTTGCGTGGAGGCGCTGAAGTGGCAGGCGGGGGAGCAAATAAGGCTGGCGGCGATGGAGAAGGCGTACGCGGAGAGGGTGAGGGAGCTAACGAAGAGG
GAAATAGAATTGGCGCAAACGGAATTCGCGAGGGCTCGACAGATGTGGGAAAGGGCGAGAGAAGAAGTGGAAAAGGCGGAGCGGATGAGAGAGAGAGCGACTCGACAGGT
GGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATGAAGATCAGAAGGAGTTGCAGCTCCTTCCGACGCCTCACTCCATAGCGTCCTCCTCCTCCTCCCGTCCATCCGACTCGTCGTTACGATTCCGATCCGATCT
ATTGGAACCGGGGCAAGGATCCGTGGACCTGCAATTGTCGATAAGCCTGAGGCCAATCCGGCCGGCGGCGGGGGCGGAGTGCTTGTTGAAGTACGAGGAGGTGATGAAGC
CGGAGGCGGGGAGTTGCGTGGAGGCGCTGAAGTGGCAGGCGGGGGAGCAAATAAGGCTGGCGGCGATGGAGAAGGCGTACGCGGAGAGGGTGAGGGAGCTAACGAAGAGG
GAAATAGAATTGGCGCAAACGGAATTCGCGAGGGCTCGACAGATGTGGGAAAGGGCGAGAGAAGAAGTGGAAAAGGCGGAGCGGATGAGAGAGAGAGCGACTCGACAGGT
GGACTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTGTTAA
Protein sequenceShow/hide protein sequence
MEDEDQKELQLLPTPHSIASSSSSRPSDSSLRFRSDLLEPGQGSVDLQLSISLRPIRPAAGAECLLKYEEVMKPEAGSCVEALKWQAGEQIRLAAMEKAYAERVRELTKR
EIELAQTEFARARQMWERAREEVEKAERMRERATRQVDSTCMEITCQSCRQRFRPC