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Carg20230 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20230
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L18
Genome locationCarg_Chr11:511444..513466
RNA-Seq ExpressionCarg20230
SyntenyCarg20230
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000039 - Ribosomal protein L18e
IPR021131 - Ribosomal protein L18e/L15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6341633.1 unnamed protein product [Miscanthus lutarioriparius]1.2e-1273.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E+      NAGGECLTFDQLALRAPLGQNTVLLRGPKN+REA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

KAG7021456.1 60S ribosomal protein L18-2, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-72100Show/hide
Query:  MNLDQRKRILATPTSVPYNESDNESQPPNQQNSKIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATK
        MNLDQRKRILATPTSVPYNESDNESQPPNQQNSKIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATK
Subjt:  MNLDQRKRILATPTSVPYNESDNESQPPNQQNSKIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATK

Query:  YFDPVPTAQPYQTICEVQGAIPSSSVLGDESKQLPVNAAW
        YFDPVPTAQPYQTICEVQGAIPSSSVLGDESKQLPVNAAW
Subjt:  YFDPVPTAQPYQTICEVQGAIPSSSVLGDESKQLPVNAAW

OVA13086.1 Ribosomal protein L18e [Macleaya cordata]1.8e-1362.69Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP-TAQPYQTICEVQG
        R  E        AGGECLTFDQLALRAPLGQNTVLLR PKN+RE+ K+F   P   QP+Q +C VQG
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP-TAQPYQTICEVQG

XP_002465302.1 60S ribosomal protein L18-3 [Sorghum bicolor]1.2e-1273.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E+      NAGGECLTFDQLALRAPLGQNTVLLRGPKN+REA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

XP_039052116.1 60S ribosomal protein L18-2-like isoform X2 [Hibiscus syriacus]1.2e-1273.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E+      NAGGECLTFDQLALRAPLGQNTVLLRGPKN REA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

TrEMBL top hitse value%identityAlignment
A0A0D3FIA9 Ribosomal_L18e/L15P domain-containing protein5.6e-1373.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E+      NAGGECLTFDQLALRAPLGQNTVLLRGPKN+REA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

A0A200QRH5 Ribosomal protein L18e8.6e-1462.69Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP-TAQPYQTICEVQG
        R  E        AGGECLTFDQLALRAPLGQNTVLLR PKN+RE+ K+F   P   QP+Q +C VQG
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP-TAQPYQTICEVQG

A0A3L6TI68 Ribosomal_L18e/L15P domain-containing protein5.6e-1373.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E+      NAGGECLTFDQLALRAPLGQNTVLLRGPKN+REA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

A0A6A3CGS6 60S ribosomal protein L185.6e-1373.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E+      NAGGECLTFDQLALRAPLGQNTVLLRGPKN REA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

K4AFL1 Ribosomal_L18e/L15P domain-containing protein5.6e-1373.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E+      NAGGECLTFDQLALRAPLGQNTVLLRGPKN+REA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

SwissProt top hitse value%identityAlignment
O22254 Putative 60S ribosomal protein L18-11.1e-1051.35Show/hide
Query:  KIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREATKYFDPVP
        +I++V   T+T+        R  ES       AGGECLTFDQLAL  P   +NTVLLRGPKN+REA K+F P P
Subjt:  KIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREATKYFDPVP

O65729 60S ribosomal protein L18 (Fragment)1.1e-1062.26Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        +  E+       AGGECLTFDQLALR PL  +TVLLRGPKN+REA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

P0CX49 60S ribosomal protein L18-A4.3e-1068.29Show/hide
Query:  AGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        AGGEC+T DQLA+RAP GQNT++LRGP+NSREA ++F   P
Subjt:  AGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

P42791 60S ribosomal protein L18-24.4e-1573.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E        AGGECLTFDQLALRAPLGQNTVLLRGPKNSREA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

Q940B0 60S ribosomal protein L18-34.4e-1573.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E        AGGECLTFDQLALRAPLGQNTVLLRGPKNSREA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

Arabidopsis top hitse value%identityAlignment
AT2G47570.1 Ribosomal protein L18e/L15 superfamily protein8.0e-1251.35Show/hide
Query:  KIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREATKYFDPVP
        +I++V   T+T+        R  ES       AGGECLTFDQLAL  P   +NTVLLRGPKN+REA K+F P P
Subjt:  KIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREATKYFDPVP

AT2G47570.2 Ribosomal protein L18e/L15 superfamily protein8.0e-1251.35Show/hide
Query:  KIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREATKYFDPVP
        +I++V   T+T+        R  ES       AGGECLTFDQLAL  P   +NTVLLRGPKN+REA K+F P P
Subjt:  KIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPL-GQNTVLLRGPKNSREATKYFDPVP

AT3G05590.1 ribosomal protein L183.1e-1673.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E        AGGECLTFDQLALRAPLGQNTVLLRGPKNSREA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP

AT5G27850.1 Ribosomal protein L18e/L15 superfamily protein3.1e-1673.58Show/hide
Query:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP
        R  E        AGGECLTFDQLALRAPLGQNTVLLRGPKNSREA K+F P P
Subjt:  RLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTGGACCAAAGGAAACGAATTCTTGCAACTCCCACCTCAGTCCCTTATAATGAATCAGATAATGAATCACAGCCACCAAATCAGCAAAATTCGAAGATCAAAAA
TGTTAAAGAGTCAACAATCACATCTCAGAGTCTTGATTTCAAAGAAAATAGATTAATGGAAAGTAGGGGAAAAAATTTCCCAAATGCTGGTGGGGAGTGTTTGACATTTG
ACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTCCTAAGAACTCCCGGGAGGCCACAAAGTATTTTGATCCTGTACCTACCGCACAGCCA
TACCAAACCATATGTGAGGTTCAAGGAGCAATACCTTCTTCTAGTGTATTAGGTGATGAGTCAAAACAACTTCCCGTCAATGCAGCATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTGGACCAAAGGAAACGAATTCTTGCAACTCCCACCTCAGTCCCTTATAATGAATCAGATAATGAATCACAGCCACCAAATCAGCAAAATTCGAAGATCAAAAA
TGTTAAAGAGTCAACAATCACATCTCAGAGTCTTGATTTCAAAGAAAATAGATTAATGGAAAGTAGGGGAAAAAATTTCCCAAATGCTGGTGGGGAGTGTTTGACATTTG
ACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTCCTAAGAACTCCCGGGAGGCCACAAAGTATTTTGATCCTGTACCTACCGCACAGCCA
TACCAAACCATATGTGAGGTTCAAGGAGCAATACCTTCTTCTAGTGTATTAGGTGATGAGTCAAAACAACTTCCCGTCAATGCAGCATGGTAA
Protein sequenceShow/hide protein sequence
MNLDQRKRILATPTSVPYNESDNESQPPNQQNSKIKNVKESTITSQSLDFKENRLMESRGKNFPNAGGECLTFDQLALRAPLGQNTVLLRGPKNSREATKYFDPVPTAQP
YQTICEVQGAIPSSSVLGDESKQLPVNAAW