CuGenDBv2

Gene ID	Carg20246
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NusB domain-containing protein
Genome location	Carg_Chr02:4711311..4715166
RNA-Seq Expression	Carg20246
Synteny	Carg20246
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0031564 - transcription antitermination (biological process) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR006027 - NusB/RsmB/TIM44 IPR011605 - NusB antitermination factor IPR035926 - NusB-like superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605513.1 hypothetical protein SDJN03_02830, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-164

100

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

XP_008449897.1 PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo]

1.2e-131

84.21

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Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

XP_022948088.1 uncharacterized protein LOC111451776 [Cucurbita moschata]

1.2e-163

99.34

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

XP_023007062.1 uncharacterized protein LOC111499665 [Cucurbita maxima]

6.5e-162

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

XP_023532267.1 uncharacterized protein LOC111794466 [Cucurbita pepo subsp. pepo]

2.2e-162

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Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSS VSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAE+LAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILEL ILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWZ5 NusB domain-containing protein

7.1e-130

83.33

Show/hide

Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS  +SGIC+FPF  S+IVP++K+S+PR C QASLRASTSFS+N V +E SS+ +SSIE IPK+DKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLNAR E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAV D WDS  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVK
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+E DS  AR K
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVK

A0A1S3BNR2 uncharacterized protein LOC103491638 isoform X1

5.8e-132

84.21

Show/hide

Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

A0A5D3DDJ4 NusB/RsmB/TIM44

5.8e-132

84.21

Show/hide

Query:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL
        D VI TRPNFHFS+ +SGIC+FPF  S+IVP+VK S+PRLC QASLRASTSF +N V +E SS+ VSSIE IPKIDKSG+FCSPRAARELALSI+YA+CL
Subjt:  DNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCL

Query:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK
        EGSDPVRLFEKRLN+R E GYEFDKTSLMEYNHMSFGGPPVTVET EEADELLRKDE+DS IEAEILAAPPK+VYSKLILRFTRKLLVAVVD WD+  LK
Subjt:  EGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLK

Query:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV
        I+KVIP TWK+KPAGRILELCILHLAMSEITV+GTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI+ETDST AR K+ V
Subjt:  IDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVV

A0A6J1G8E0 uncharacterized protein LOC111451776

5.7e-164

99.34

Show/hide

Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVS+VVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

A0A6J1KXJ4 uncharacterized protein LOC111499665

3.1e-162

Show/hide

Query:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
        MVELVSMVVLPTRLDNVIATRPNFHFSS VSGIC FPFPTSAIVPYVKESVP LCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA
Subjt:  MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRA

Query:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
        ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL
Subjt:  ARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKL

Query:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
        LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS
Subjt:  LVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVS

Query:  T
        T
Subjt:  T

SwissProt top hits

e value

%identity

Alignment

A7GWZ7 Transcription antitermination protein NusB

1.8e-05

35.37

Show/hide

Query:  VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL
        +  ++ +D+  LK   +D+++    K+K   R  I+EL IL L + E+   GT   ++INEA++LAK     +AP+ ING L
Subjt:  VAVVDRWDSHVLK---IDKVIPSTWKDKPAGR--ILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCL

B1WXY6 Transcription antitermination protein NusB

5.2e-05

38.67

Show/hide

Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQ
        +ID+ + +  KD    R+  ++  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F   I+
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQ

Q18B61 Transcription antitermination protein NusB

3.6e-06

39.19

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Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
        KID++I    K+    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P+ ING L + V +I
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI

Q5N1J7 Transcription antitermination protein NusB

2.3e-05

42.65

Show/hide

Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Q8GIR7 Transcription antitermination protein NusB

2.3e-05

42.65

Show/hide

Query:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR
        +ID+ +     D    R+  L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Subjt:  KIDKVIPSTWKDKPAGRI--LELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR

Arabidopsis top hits

e value

%identity

Alignment

AT4G26370.1 antitermination NusB domain-containing protein

5.4e-90

68.03

Show/hide

Query:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV
        +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGSDP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  
Subjt:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV

Query:  ETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINE
        ET EE DEL+R DEK+S IEAE+L+APPK+VYSKL+LRF +KLL AVVD+WDSHV+ I+K+ P  WK  PAGRILE  ILHLAMSE+ V+ TRH IVINE
Subjt:  ETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIPSTWKDKPAGRILELCILHLAMSEITVVGTRHQIVINE

Query:  AVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVKEVVS
        AVDLAKRFCDG+APRIINGCLRTFVKD   T +  A  +K+ VS
Subjt:  AVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHA-RVKEVVS

AT4G26370.2 antitermination NusB domain-containing protein

1.4e-37

62.9

Show/hide

Query:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV
        +SLR   S +++++   + S       P+PKIDKSGR  SPRAARELAL I+YA+CLEGSDP+RLFEKR+NAR EPGYEFDK+SL+EYNHMSFGGPPV  
Subjt:  ASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIYASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTV

Query:  ETAEEADELLRKDEKDSAIEAEIL
        ET EE DEL+R DEK+S I   ++
Subjt:  ETAEEADELLRKDEKDSAIEAEIL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGGAACTGGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCCCGTTTCTGGAATATGCCGTTTCCC
ATTCCCCACTAGTGCCATTGTTCCCTATGTAAAAGAATCCGTGCCACGCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAG
AGAGCAGTTCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTAT
GCATCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCTGGATATGAATTTGACAAGACATCATTGATGGAATACAACCA
TATGAGCTTTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGAGGCAGAAATCCTTGCGGCTC
CTCCAAAGGTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCT
TCAACTTGGAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGA
GGCCGTCGATCTTGCAAAACGATTCTGCGATGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTC
GTGTGAAGGAAGTAGTCAGTACATGA

mRNA sequence

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CCTTCTTTCTAACCCCTCGTTCCCGGCTTAAACCCTCCACGTTCAGCAGAGGTCAACCGGAATTGGATCAGCCATATGGTTTGAAATTCTCCTACGTCCAGCATGGTGGA
ACTGGTATCAATGGTGGTTTTGCCCACAAGACTGGATAATGTTATTGCTACCAGGCCTAATTTTCATTTCTCCTCCCCCGTTTCTGGAATATGCCGTTTCCCATTCCCCA
CTAGTGCCATTGTTCCCTATGTAAAAGAATCCGTGCCACGCCTCTGCCCTCAAGCCTCGCTTCGCGCTTCTACTTCTTTCTCCAAAAATTCTGTGGGTAAAGAGAGCAGT
TCTGTTTTAGTTTCTTCCATTGAACCAATACCAAAGATTGACAAGAGTGGGAGATTTTGTAGCCCCAGAGCTGCTAGAGAGCTTGCTTTGTCAATTATTTATGCATCTTG
TTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCTCGTCTAGAACCTGGATATGAATTTGACAAGACATCATTGATGGAATACAACCATATGAGCT
TTGGTGGGCCGCCAGTTACTGTGGAAACAGCTGAAGAAGCAGATGAGCTTCTACGTAAGGATGAAAAGGATTCTGCAATCGAGGCAGAAATCCTTGCGGCTCCTCCAAAG
GTTGTCTACAGCAAACTGATCTTACGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACAGATGGGACAGTCACGTGCTTAAAATTGATAAAGTCATTCCTTCAACTTG
GAAGGACAAGCCAGCAGGACGGATTCTGGAACTTTGTATTCTTCACCTGGCTATGTCTGAAATAACGGTGGTTGGAACAAGGCATCAGATTGTGATTAACGAGGCCGTCG
ATCTTGCAAAACGATTCTGCGATGGAGCAGCACCTCGAATTATTAACGGGTGCCTTAGGACCTTTGTGAAGGACATCCAAGAAACTGATTCTACTCATGCTCGTGTGAAG
GAAGTAGTCAGTACATGACTCTAAACTCTTGGGGTGGCTCAGGACCTTTGTAAGGATATCAAAAATTTTGACTCAACTCGTGCTCTAGAGAAGCAAGAAGTGACTCTGAA
AGTGGCGAGTCGTTAAGATGCTGTTGGCCGGATGGATAAGGGATTAGAGGGCACTTCCATGGAAATGGAGTACTACGGAGTTTTAGATGTGTGTAATTCTTCTAGGGAGA
TAGTTCCTACAAAAGACTTCGGTTAAGTGTATCAACTTTACCTCCTAAGTTTTAATTTTATCAAATGAAATTCTGGACTTAGAACATGTATTGTAATCTTTACCTCAGGG
TTGAGGTCGGCTCCCAGGAATTTGTTAGATTTTGATGCAAAAAGGGACCAATTAGCAACAGAAATCCACCCAGGCCCTCCAAAACAATGAAAGACTTAATTCCAAACAAA
CCCATAAATATTTGTCCTGCTTCCCT

Protein sequence

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MVELVSMVVLPTRLDNVIATRPNFHFSSPVSGICRFPFPTSAIVPYVKESVPRLCPQASLRASTSFSKNSVGKESSSVLVSSIEPIPKIDKSGRFCSPRAARELALSIIY
ASCLEGSDPVRLFEKRLNARLEPGYEFDKTSLMEYNHMSFGGPPVTVETAEEADELLRKDEKDSAIEAEILAAPPKVVYSKLILRFTRKLLVAVVDRWDSHVLKIDKVIP
STWKDKPAGRILELCILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIQETDSTHARVKEVVST

Carg20246 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome