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Carg20267 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20267
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein SODIUM POTASSIUM ROOT DEFECTIVE 3-like
Genome locationCarg_Chr02:4557135..4557584
RNA-Seq ExpressionCarg20267
SyntenyCarg20267
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605489.1 Protein SODIUM POTASSIUM ROOT DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. sororia]1.3e-4979.87Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
        MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGS       D P          
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV

Query:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
                    GSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
Subjt:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV

KAG7035431.1 hypothetical protein SDJN02_02227, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-73100Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
        MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV

Query:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
        EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
Subjt:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV

XP_022947509.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 3-like [Cucurbita moschata]7.6e-7197.99Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
        MKRFDLFCKSRASTAVRSSFGCR VAGDVNSGDGRK QLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV

Query:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
        EDFSQAPA MSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
Subjt:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV

XP_023006946.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 2-like [Cucurbita maxima]3.9e-6794.63Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
        MKRFDLFCKSRASTAVRSSFGCRPVAGDVNS D RK QLHFEKPRKSTS SSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV

Query:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
        E FSQAPA MSHGSKK SSLSRSLSVHESPSSVLESPVLKTSSSA+SRV
Subjt:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV

XP_023532289.1 protein SODIUM POTASSIUM ROOT DEFECTIVE 3-like [Cucurbita pepo subsp. pepo]7.1e-6996.64Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
        MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGD RK QLHFEKPRKSTSVSSVNRK+HIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFIN LPATAV
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV

Query:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
        EDFSQAPA MSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
Subjt:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV

TrEMBL top hitse value%identityAlignment
A0A5A7V4V4 Protein SODIUM POTASSIUM ROOT DEFECTIVE 14.4e-4067.92Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSS-VNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATA
        MK+ DLFCKSRASTAVRSSFG RPV GD +SGD RK QLHFE  RKSTS SS VNRK+  DLRRKSCAD DDLK S VSGSS+RYLLGD+PF++W PA A
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSS-VNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATA

Query:  VEDFSQAPA-----TMSHGSKKASSLSRSLSVHE-----SPSSVLESPVLKTSSSAHSR
          D   AP       +SH S+K+ SL+RSL+VHE     SPSSVLESPVLKTSS   SR
Subjt:  VEDFSQAPA-----TMSHGSKKASSLSRSLSVHE-----SPSSVLESPVLKTSSSAHSR

A0A6J1FTK0 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like1.4e-4169.68Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
        MK+ D FCKSRASTAVRSSFG RPV GD NSGD RK QL FE  RKSTS SSVNRKDH DLRRKSCAD+DDLK SSVSGSS+RYLL DS FI+WLPA + 
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV

Query:  EDFSQAPATMSHGSKKASSLSRSLSVHE-----SPSSVLESPVLKTSSSA-HSRV
        EDF   P          SSL+RSL+VHE     SPSSVL+SPVLKT+SSA H +V
Subjt:  EDFSQAPATMSHGSKKASSLSRSLSVHE-----SPSSVLESPVLKTSSSA-HSRV

A0A6J1G708 protein SODIUM POTASSIUM ROOT DEFECTIVE 3-like3.7e-7197.99Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
        MKRFDLFCKSRASTAVRSSFGCR VAGDVNSGDGRK QLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV

Query:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
        EDFSQAPA MSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
Subjt:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV

A0A6J1J8X9 protein SODIUM POTASSIUM ROOT DEFECTIVE 1-like8.0e-4269.68Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
        MK+ D FCKSRASTAVRSSFG RPV GD NSGD RK QL FE  RKSTS SSVNRKDH DLRRKSCAD+DDLK SSVSGSS+RYLL DS FI+WLPA + 
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV

Query:  EDFSQAPATMSHGSKKASSLSRSLSVHE-----SPSSVLESPVLKTSSSA-HSRV
        EDF   P          SSL+RSL+VHE     SPSSVL+SPVLKT+SSA H +V
Subjt:  EDFSQAPATMSHGSKKASSLSRSLSVHE-----SPSSVLESPVLKTSSSA-HSRV

A0A6J1KZ68 protein SODIUM POTASSIUM ROOT DEFECTIVE 2-like1.9e-6794.63Show/hide
Query:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
        MKRFDLFCKSRASTAVRSSFGCRPVAGDVNS D RK QLHFEKPRKSTS SSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV
Subjt:  MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAV

Query:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV
        E FSQAPA MSHGSKK SSLSRSLSVHESPSSVLESPVLKTSSSA+SRV
Subjt:  EDFSQAPATMSHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAGATTTGACCTTTTTTGCAAATCCAGAGCTTCCACGGCGGTTCGTTCAAGCTTTGGCTGCCGTCCGGTCGCCGGAGATGTCAATTCCGGCGATGGGAGAAAAGT
GCAGCTTCATTTTGAAAAGCCCAGAAAGAGTACGAGTGTTTCCTCTGTGAATCGAAAGGATCATATCGATTTACGAAGAAAAAGCTGTGCGGATATGGATGATTTGAAGA
ACAGCTCTGTTTCTGGTTCTTCTTCTCGTTATCTGTTGGGCGATTCGCCGTTCATTAACTGGCTTCCGGCAACCGCCGTCGAGGATTTTTCTCAGGCTCCGGCGACGATG
AGCCATGGTTCTAAGAAGGCTTCTTCGTTGAGTCGTTCGTTAAGTGTACATGAATCTCCTTCCTCTGTTCTTGAATCCCCTGTTCTGAAAACTTCTTCTTCAGCTCACTC
TCGTGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGATTTGACCTTTTTTGCAAATCCAGAGCTTCCACGGCGGTTCGTTCAAGCTTTGGCTGCCGTCCGGTCGCCGGAGATGTCAATTCCGGCGATGGGAGAAAAGT
GCAGCTTCATTTTGAAAAGCCCAGAAAGAGTACGAGTGTTTCCTCTGTGAATCGAAAGGATCATATCGATTTACGAAGAAAAAGCTGTGCGGATATGGATGATTTGAAGA
ACAGCTCTGTTTCTGGTTCTTCTTCTCGTTATCTGTTGGGCGATTCGCCGTTCATTAACTGGCTTCCGGCAACCGCCGTCGAGGATTTTTCTCAGGCTCCGGCGACGATG
AGCCATGGTTCTAAGAAGGCTTCTTCGTTGAGTCGTTCGTTAAGTGTACATGAATCTCCTTCCTCTGTTCTTGAATCCCCTGTTCTGAAAACTTCTTCTTCAGCTCACTC
TCGTGTATGA
Protein sequenceShow/hide protein sequence
MKRFDLFCKSRASTAVRSSFGCRPVAGDVNSGDGRKVQLHFEKPRKSTSVSSVNRKDHIDLRRKSCADMDDLKNSSVSGSSSRYLLGDSPFINWLPATAVEDFSQAPATM
SHGSKKASSLSRSLSVHESPSSVLESPVLKTSSSAHSRV