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Carg20298 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20298
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRab5-interacting
Genome locationCarg_Chr02:4387417..4390285
RNA-Seq ExpressionCarg20298
SyntenyCarg20298
Gene Ontology termsGO:0006996 - organelle organization (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010742 - Rab5-interacting protein
IPR029008 - Rab5-interacting protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035401.1 hypothetical protein SDJN02_02197 [Cucurbita argyrosperma subsp. argyrosperma]3.7e-66100Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
XP_022947918.1 uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita moschata]1.4e-6599.22Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
XP_023007370.1 uncharacterized protein C20orf24 homolog [Cucurbita maxima]5.4e-6597.67Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTS+VYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSL HF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
XP_023532324.1 uncharacterized protein C20orf24 homolog isoform X2 [Cucurbita pepo subsp. pepo]1.9e-6598.45Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWIL+YSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
XP_038900616.1 respirasome Complex Assembly Factor 1-like [Benincasa hispida]7.8e-6496.12Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKE+ PVKFNLHQHQ+HQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
TrEMBL top hitse value%identityAlignment
A0A0A0KFE5 Uncharacterized protein1.1e-6395.35Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQ GHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAV+LGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
A0A1S4E4J0 uncharacterized protein C20orf24 homolog8.4e-6496.12Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQ GHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
A0A5D3DK85 Rab5-interacting8.4e-6496.12Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEA PVKFNLHQHQ+HQ GHLAPFKLAKL DPEASWDKDQLGDVLHWIRQAVAVVLGLLWG+IPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
A0A6J1G7Y2 uncharacterized protein C20orf24 homolog isoform X26.9e-6699.22Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSLAHF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
A0A6J1L2S3 uncharacterized protein C20orf24 homolog2.6e-6597.67Show/hide
Query:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG
        MKEANPVKFNLHQHQEHQ GHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTS+VYGYYAMILKVDEEEFGG
Subjt:  MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGG

Query:  HGALLQEGLFASITLFLLAWILVYSLAHF
        HGALLQEGLFASITLFLLAWILVYSL HF
Subjt:  HGALLQEGLFASITLFLLAWILVYSLAHF
SwissProt top hitse value%identityAlignment
Q9BUV8 Respirasome Complex Assembly Factor 11.5e-1439.22Show/hide
Query:  AKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSL
        +K+   +A+W DKD+  DV++W RQ +AVVLG++WG +PL G +    F  I+  V+Y Y++  L++DEEE+GG   L +EG   S  LF++     ++ 
Subjt:  AKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSL

Query:  AH
         H
Subjt:  AH
Q9CQT9 Respirasome Complex Assembly Factor 11.5e-1740.78Show/hide
Query:  AKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSL
        +K+   +A+W DKD+  DV++W RQ +A+VLG++WG +PL G +    F  I+  V+Y Y++  L++DEEE+GG   L +EG   S  LF++ WI+ Y+ 
Subjt:  AKLFDPEASW-DKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLFASITLFLLAWILVYSL

Query:  AHF
         H+
Subjt:  AHF
Arabidopsis top hitse value%identityAlignment
AT2G29020.1 Rab5-interacting family protein3.7e-4869.17Show/hide
Query:  MKEANPVKFNLHQHQE----HQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEE
        MKE    K +  Q Q     HQ  HL  F  AKLFD EASWDKDQLGDVLHWIRQ V ++ GLLWGAIPLVGGIW L+FLAIS+ +VYGYYA++LK+DEE
Subjt:  MKEANPVKFNLHQHQE----HQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEE

Query:  EFGGHGALLQEGLFASITLFLLAWILVYSLAHF
        +FGGH ALLQ+GLFAS++LFLLAWILVYSL+ F
Subjt:  EFGGHGALLQEGLFASITLFLLAWILVYSLAHF
AT5G59410.1 Rab5-interacting family protein4.6e-5476.92Show/hide
Query:  MKEANPVKFN-LHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFG
        MKE+   K N L Q + HQ  HL+P KLAKLFDP+ASWDKDQLGDVLHWIRQ V ++ GLLWG+IPLVGGIW ++FLAIS+ +VYGYYAMILKVDEE+FG
Subjt:  MKEANPVKFN-LHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFG

Query:  GHGALLQEGLFASITLFLLAWILVYSLAHF
        GH ALLQEGLFAS+TLFLLAWILVYSLAHF
Subjt:  GHGALLQEGLFASITLFLLAWILVYSLAHF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGAAGCGAATCCGGTTAAGTTCAATCTTCACCAGCATCAAGAGCACCAGACTGGTCACTTGGCCCCGTTCAAGCTCGCTAAATTGTTCGATCCAGAGGCCTCCTG
GGACAAGGATCAGCTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTACTCGGGCTGCTGTGGGGCGCCATACCTTTGGTTGGAGGCATATGGTTTCTAA
TTTTCTTGGCGATATCGACCAGCGTAGTATATGGATACTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAGGTCATGGAGCTCTTCTCCAAGAGGGGCTTTTT
GCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCACACTTTTGA
mRNA sequenceShow/hide mRNA sequence
TGAAAACCCTAGGAGTACTGTTCCTATAGGAGGATTTTATCCGCTCGTTTGCTGGAATTTAGATCTGAGCTTACTGTAGATCATTTGATTTTTTTTTTTTTTTAATTCTA
TTTAGTTTTCCGGTTTGATTGGATTGTCCGGTATGAAAGAAGCGAATCCGGTTAAGTTCAATCTTCACCAGCATCAAGAGCACCAGACTGGTCACTTGGCCCCGTTCAAG
CTCGCTAAATTGTTCGATCCAGAGGCCTCCTGGGACAAGGATCAGCTAGGAGATGTTTTGCACTGGATTCGACAAGCAGTGGCCGTTGTACTCGGGCTGCTGTGGGGCGC
CATACCTTTGGTTGGAGGCATATGGTTTCTAATTTTCTTGGCGATATCGACCAGCGTAGTATATGGATACTATGCAATGATTTTAAAAGTTGATGAAGAAGAATTTGGAG
GTCATGGAGCTCTTCTCCAAGAGGGGCTTTTTGCTTCTATAACTCTCTTTCTGCTTGCTTGGATTCTCGTATACAGCTTGGCACACTTTTGATTGGCGAAGAACGATTTT
GCATCATGAAATTACTTGGTGAAGTTCGAACAATGAACTTAGTTATACATATACTTGATGCCCAGCTCATTTACGCTTGCTTCTAATTGGCGGCACAGATTCTTTTAGCA
TTCATGATGTTGAACAAATTGATTTTTGAAGAGTAGGAAAACTCTAGCATCTGAACAATATGTCGTGATAGATTTTCAATCTCCATTTCATTGTAGACATTCTTCCATGG
CCATATAGTGATAGACTAAGGACGTAATCCTTGTTAAATTAACACCTTATATTGGCATCATTTAAATAGCTAGGTGCTTGAGCTTGAAGTTGAGACCTTAACAATGTTGT
GTACATTTGATGATAATTGGATAGGCTCCTCATTTTCTCAATGGCTTCTTTCATCCTGCACCATCCTAAGATAAGCCAGCAAGCACTTTATCGGTGCGATTAAGGTTTTT
TCAGCTGAAATAAGCTTGCGAAAGATTGCTGTTACATTACATAATTGGAACTTAAGATTATAAATAACTAAACTATAGGGAACGAGAAGAAGCTTCTTTTCCTTTCTTTC
TTCTCTGTTAGTGTAGCTTTTCTCTGCTTTTTAGGAAAAAAGAGACAGACAGGCTGCTAACTGACTGGACACGACATCGTGAATACGACCAGGTAAGCGGGAGATTAGAA
TCTTTGTTAGTTTTTTGATACTAACTTTTGTCTGTTAAAATGTCCTTATAGAACAGAATCATTGTTGGGTCTATGCTGTATGTGCAATATTATTGGTGATGGATCCTTTT
TTTATGTCTACAACAGGTAACATGTTAGACCCATCCTCTTGTATTCCATCTCTCGCTAGTTTTCTTTATTCAAAATCTTCTTTAGGCCTACGGTATTATTTGTTGAAATT
CGATTGAAAATTTTGTTATAGATTAATAAAGTATTCGTCTGGAAAAATAGGAAGCCAACATTTCTGACACTAAAGCCTTTCTTTAGTCTTTTAATTCTCGATATAGTGTC
ATGTAATGAGACGGCTAAACCCGTGCTCACGAATAACCAACCTGCAATGGATATAGAAGGTATAGTAATGCTATGAATGATCCAGTATCGAAAATACTTGTGATAATATT
AGTAGAAGA
Protein sequenceShow/hide protein sequence
MKEANPVKFNLHQHQEHQTGHLAPFKLAKLFDPEASWDKDQLGDVLHWIRQAVAVVLGLLWGAIPLVGGIWFLIFLAISTSVVYGYYAMILKVDEEEFGGHGALLQEGLF
ASITLFLLAWILVYSLAHF