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Carg20332 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20332
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionEKC/KEOPS complex, subunit Pcc1
Genome locationCarg_Chr18:11843937..11845073
RNA-Seq ExpressionCarg20332
SyntenyCarg20332
Gene Ontology termsGO:0070525 - tRNA threonylcarbamoyladenosine metabolic process (biological process)
GO:0000408 - EKC/KEOPS complex (cellular component)
InterPro domainsIPR015419 - CTAG/Pcc1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141079.1 uncharacterized protein LOC111011564 [Momordica charantia]7.1e-4190.82Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD
        MAPTASV SDG+AKWEF CDFEVD ESEKKASIVYNAL VDKELQPDKVKREM VSDGKLSVHFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQGLD
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD
XP_022945934.1 uncharacterized protein LOC111450028 [Cucurbita moschata]1.1e-46100Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
        MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
XP_022968168.1 uncharacterized protein LOC111467483 isoform X2 [Cucurbita maxima]8.1e-4597.98Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
        MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKR MTVSDGKLSVHFEAVEARFLRAS SAFLDVLTLAIKTIEDFGQGLDF
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
XP_023553191.1 uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo]1.3e-3986.87Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
        M PT SV SDG+  WEFSCDFEVD ESEKKASIVY ALVVDKELQPDKVKREMTVSDGKLS+HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQG+DF
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
XP_038895564.1 uncharacterized protein LOC120083771 [Benincasa hispida]3.5e-4086.87Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
        MAPTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M+VSDGKLS+HFEAVEARFLRAS+SAF+DVLTLA KT+EDFGQ +DF
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
TrEMBL top hitse value%identityAlignment
A0A1S3CTG0 uncharacterized protein LOC1035041466.1e-3881.82Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
        M PTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M++S+GKLS+HFEAVEARFLRAS+S+F+DVLTLA KTIEDFG  ++F
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
A0A5D3CJ23 EKC/KEOPS complex, subunit Pcc16.1e-3881.82Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
        M PTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M++S+GKLS+HFEAVEARFLRAS+S+F+DVLTLA KTIEDFG  ++F
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
A0A6J1CHJ5 uncharacterized protein LOC1110115643.4e-4190.82Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD
        MAPTASV SDG+AKWEF CDFEVD ESEKKASIVYNAL VDKELQPDKVKREM VSDGKLSVHFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQGLD
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLD
A0A6J1G2C3 uncharacterized protein LOC1114500285.5e-47100Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
        MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
A0A6J1HX84 uncharacterized protein LOC111467483 isoform X23.9e-4597.98Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
        MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKR MTVSDGKLSVHFEAVEARFLRAS SAFLDVLTLAIKTIEDFGQGLDF
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G53045.1 unknown protein5.6e-2862.11Show/hide
Query:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQ
        MA T    +  D  W+FSC+ +V  ESE+ A I Y +L VDKELQPDKV+R M+VS+ KLSVHFEA+EAR LRAS+SAF+DVLTLA +TI++FGQ
Subjt:  MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGTGAATCTGAGAAGAAAGCTTCAATTGTCTATAATGC
TTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGTACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTG
CATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATTTCTGA
mRNA sequenceShow/hide mRNA sequence
GAAGAATTTGACGTTTTTCCGCTAAAATTGAAGCAATGGCTCCGACAGCTTCCGTCGTTTCTGATGGAGATGCTAAATGGGAATTCAGCTGTGACTTCGAAGTGGACTGT
GAATCTGAGAAGAAAGCTTCAATTGTCTATAATGCTTTAGTCGTCGATAAAGAGTTGCAGCCAGACAAGGTGAAAAGGGAGATGACAGTTTCTGATGGAAAACTTTCAGT
ACACTTCGAGGCAGTGGAAGCAAGATTTCTGCGTGCATCATATAGTGCTTTTCTGGATGTGCTTACTCTTGCCATAAAAACAATCGAAGATTTCGGACAAGGATTGGATT
TCTGATAGCCTTCGCTCATCTTTTACATCTCATGTTTGCTTAGTTTACATCTGATCTCCAATTTTGTTACAATATGATTTGA
Protein sequenceShow/hide protein sequence
MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKLSVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF