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Carg20396 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20396
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionhydroxyproline-rich glycoprotein family protein
Genome locationCarg_Chr01:2319703..2320688
RNA-Seq ExpressionCarg20396
SyntenyCarg20396
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607098.1 hypothetical protein SDJN03_00440, partial [Cucurbita argyrosperma subsp. sororia]4.2e-89100Show/hide
Query:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
        MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
Subjt:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN

Query:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
        VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Subjt:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS

XP_022155023.1 uncharacterized protein LOC111022170 [Momordica charantia]8.6e-4258.33Show/hide
Query:  MEIATEPTIPTTSTQSKPVD-------SEQQSETSG----------------------AGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTP
        MEI  + +IP++  QS+  D       S+QQ E SG                      AGET ATPE ETP      +++K + Q+Q E S  E KT TP
Subjt:  MEIATEPTIPTTSTQSKPVD-------SEQQSETSG----------------------AGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTP

Query:  DEKTE---EKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRIS
         EK E   EK+RILVP NG  MDRLKVPKSPN AG+ K   GI LPKNGTPNRLKVPKAFKY ERY SPTDLMMSPI+KGLLARTRKGAVPSKMHELRI 
Subjt:  DEKTE---EKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRIS

Query:  EMSL
        EMSL
Subjt:  EMSL

XP_022948389.1 uncharacterized protein LOC111452080 [Cucurbita moschata]1.8e-8798.85Show/hide
Query:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
        MEIATEPTIPTT TQSKPVDSEQQSETSGAGETTAT ELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
Subjt:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN

Query:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
        VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Subjt:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS

XP_022998048.1 uncharacterized protein LOC111492813 [Cucurbita maxima]9.8e-8696.55Show/hide
Query:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
        MEIATEP IPTT TQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGK Q+QMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
Subjt:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN

Query:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
        VAGE KQRGGIA PKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Subjt:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS

XP_023525350.1 uncharacterized protein LOC111788976 [Cucurbita pepo subsp. pepo]5.7e-8696.55Show/hide
Query:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
        MEIATEPTIPTT TQSKPVDSEQQSETSGAGETTATPELETPI+GTPDREKKGKG++Q ESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
Subjt:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN

Query:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
        VAGEAKQRGGIALP+NGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Subjt:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS

TrEMBL top hitse value%identityAlignment
A0A1S3CI15 uncharacterized protein LOC1035011893.6e-3360.98Show/hide
Query:  EQQSETSGAGETTATPELETPING---TPDREKK-GKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSP-NVAGEAK---QR---GG
        +++ E S +   T TP+ +T        P +E K  K   ++     ECKTPTPDEKT++K+RILVP NG  MDR KVPKSP  V  E K   QR   GG
Subjt:  EQQSETSGAGETTATPELETPING---TPDREKK-GKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSP-NVAGEAK---QR---GG

Query:  IALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
        I LPKNGTPNRLK+P AFKY ERY SPTDLM+SPI+KGLLARTRKGAVPSKMHELR SEMSL S
Subjt:  IALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS

A0A5A7UZK0 Uncharacterized protein3.6e-3360.98Show/hide
Query:  EQQSETSGAGETTATPELETPING---TPDREKK-GKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSP-NVAGEAK---QR---GG
        +++ E S +   T TP+ +T        P +E K  K   ++     ECKTPTPDEKT++K+RILVP NG  MDR KVPKSP  V  E K   QR   GG
Subjt:  EQQSETSGAGETTATPELETPING---TPDREKK-GKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSP-NVAGEAK---QR---GG

Query:  IALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
        I LPKNGTPNRLK+P AFKY ERY SPTDLM+SPI+KGLLARTRKGAVPSKMHELR SEMSL S
Subjt:  IALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS

A0A6J1DLV5 uncharacterized protein LOC1110221704.2e-4258.33Show/hide
Query:  MEIATEPTIPTTSTQSKPVD-------SEQQSETSG----------------------AGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTP
        MEI  + +IP++  QS+  D       S+QQ E SG                      AGET ATPE ETP      +++K + Q+Q E S  E KT TP
Subjt:  MEIATEPTIPTTSTQSKPVD-------SEQQSETSG----------------------AGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTP

Query:  DEKTE---EKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRIS
         EK E   EK+RILVP NG  MDRLKVPKSPN AG+ K   GI LPKNGTPNRLKVPKAFKY ERY SPTDLMMSPI+KGLLARTRKGAVPSKMHELRI 
Subjt:  DEKTE---EKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRIS

Query:  EMSL
        EMSL
Subjt:  EMSL

A0A6J1G9R7 uncharacterized protein LOC1114520808.6e-8898.85Show/hide
Query:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
        MEIATEPTIPTT TQSKPVDSEQQSETSGAGETTAT ELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
Subjt:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN

Query:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
        VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Subjt:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS

A0A6J1KFQ1 uncharacterized protein LOC1114928134.7e-8696.55Show/hide
Query:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
        MEIATEP IPTT TQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGK Q+QMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN
Subjt:  MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPN

Query:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
        VAGE KQRGGIA PKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS
Subjt:  VAGEAKQRGGIALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G02120.1 hydroxyproline-rich glycoprotein family protein3.1e-1341.03Show/hide
Query:  MESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALP--KNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKG
        ME  +   +TP    KT+   R +   N         P+S         R     P  K GTP RL+VP AFKY ERY SPTD MMSP+TKGLLARTRK 
Subjt:  MESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGGIALP--KNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKG

Query:  A---VPSKMHELRISEM
        +   +P   ++ +I E+
Subjt:  A---VPSKMHELRISEM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTGCGACTGAACCAACCATTCCCACAACCTCAACTCAGTCAAAACCTGTAGATTCCGAACAACAATCTGAAACTTCCGGCGCCGGCGAAACGACGGCGACCCC
AGAACTTGAAACGCCCATAAACGGAACCCCAGATCGAGAGAAGAAGGGAAAAGGCCAAGACCAAATGGAAAGTTCGAAATGTGAGTGTAAAACGCCAACCCCTGATGAGA
AAACAGAGGAAAAACAGAGGATTTTGGTCCCTGTTAATGGTTTGATGATGGATCGATTGAAGGTGCCGAAGAGCCCGAACGTGGCTGGAGAAGCTAAACAAAGAGGGGGC
ATTGCATTGCCCAAGAATGGTACTCCGAATCGGCTGAAAGTGCCGAAAGCATTCAAATATCACGAAAGGTATACAAGTCCGACGGATTTGATGATGTCGCCTATCACCAA
AGGCCTTCTCGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGATGCATGAGCTCAGAATTTCAGAGATGAGTCTTCATAGCTGA
mRNA sequenceShow/hide mRNA sequence
CTTTTCTTCTTCATTTCCCTTTCGATTATCTGTAATCCCTCGAAGCTCATCGGTTCCCATGGAGATTGCGACTGAACCAACCATTCCCACAACCTCAACTCAGTCAAAAC
CTGTAGATTCCGAACAACAATCTGAAACTTCCGGCGCCGGCGAAACGACGGCGACCCCAGAACTTGAAACGCCCATAAACGGAACCCCAGATCGAGAGAAGAAGGGAAAA
GGCCAAGACCAAATGGAAAGTTCGAAATGTGAGTGTAAAACGCCAACCCCTGATGAGAAAACAGAGGAAAAACAGAGGATTTTGGTCCCTGTTAATGGTTTGATGATGGA
TCGATTGAAGGTGCCGAAGAGCCCGAACGTGGCTGGAGAAGCTAAACAAAGAGGGGGCATTGCATTGCCCAAGAATGGTACTCCGAATCGGCTGAAAGTGCCGAAAGCAT
TCAAATATCACGAAAGGTATACAAGTCCGACGGATTTGATGATGTCGCCTATCACCAAAGGCCTTCTCGCCAGAACCAGGAAAGGGGCTGTCCCTTCCAAGATGCATGAG
CTCAGAATTTCAGAGATGAGTCTTCATAGCTGAATAAATGTGTTCTTATGGGCCTCAAAAATTTCATGGGTTCTTCTCTTTTCATTTCCATTGCTTCTTGTATCACTTCT
TTATGATTCTTTATGAATTTAATTGTATTAAATCATCCTTGTGTCGAGACAAGTCATTGAATCTTGTAATGGAAGTGGAAGCAACATCGATCATACTCAAACACCCAAAA
ACGAAAATTTAACAAAAACATACAAAGATTTACGTGGTTCGG
Protein sequenceShow/hide protein sequence
MEIATEPTIPTTSTQSKPVDSEQQSETSGAGETTATPELETPINGTPDREKKGKGQDQMESSKCECKTPTPDEKTEEKQRILVPVNGLMMDRLKVPKSPNVAGEAKQRGG
IALPKNGTPNRLKVPKAFKYHERYTSPTDLMMSPITKGLLARTRKGAVPSKMHELRISEMSLHS