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Carg20402 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20402
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription factor UPBEAT1-like
Genome locationCarg_Chr01:2364454..2364759
RNA-Seq ExpressionCarg20402
SyntenyCarg20402
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056655.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]3.5e-2163.64Show/hide
Query:  WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA
        WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+E+LF++TADYI      VFVLQRLIEFYGSD+RENAVS+
Subjt:  WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA
KAG6607102.1 hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia]3.6e-4294.06Show/hide
Query:  MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVS
        MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI      VFVLQRLIEFYGSDERENAVS
Subjt:  MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVS

Query:  A
        A
Subjt:  A
KAG7036793.1 hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-44100Show/hide
Query:  MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVFVLQRLIEFYGSDERENAVSA
        MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVFVLQRLIEFYGSDERENAVSA
Subjt:  MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVFVLQRLIEFYGSDERENAVSA
PON40768.1 transcription factor UPBEAT-like protein [Parasponia andersonii]2.4e-0950Show/hide
Query:  KQSTRRAVLRSR-YGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVF------VLQRLIEFYGSDERENAVS
        K + RR   R R   SR   ARR   NGG  CSS VS +LEAL+ LIP     EG   ++++LFQ+TADYIV       +LQ+LIEFYGS + E+AVS
Subjt:  KQSTRRAVLRSR-YGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVF------VLQRLIEFYGSDERENAVS
TYK04615.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa]3.5e-2163.64Show/hide
Query:  WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA
        WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+E+LF++TADYI      VFVLQRLIEFYGSD+RENAVS+
Subjt:  WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA
TrEMBL top hitse value%identityAlignment
A0A2P5AW87 Transcription factor UPBEAT-like protein1.1e-0950Show/hide
Query:  KQSTRRAVLRSR-YGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVF------VLQRLIEFYGSDERENAVS
        K + RR   R R   SR   ARR   NGG  CSS VS +LEAL+ LIP     EG   ++++LFQ+TADYIV       +LQ+LIEFYGS + E+AVS
Subjt:  KQSTRRAVLRSR-YGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVF------VLQRLIEFYGSDERENAVS
A0A314YX88 Uncharacterized protein2.6e-0946.67Show/hide
Query:  MSWKQSTRRAVLRSRYGSRILRA-RRIHKNGG---KACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVF------VLQRLIEFYGSDERE
        ++ ++ TRR   R R GSR   A RR   NGG   K  S  VSA+LE L+SLI   + G+    ++EELFQETADYIV       +LQRL+E YGS E+E
Subjt:  MSWKQSTRRAVLRSRYGSRILRA-RRIHKNGG---KACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVF------VLQRLIEFYGSDERE

Query:  NAVSA
           +A
Subjt:  NAVSA
A0A5A7UT08 Transcription factor UPBEAT1-like1.7e-2163.64Show/hide
Query:  WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA
        WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+E+LF++TADYI      VFVLQRLIEFYGSD+RENAVS+
Subjt:  WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA
A0A5D3BZU8 Transcription factor UPBEAT1-like1.7e-2163.64Show/hide
Query:  WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA
        WKQSTRR VL SR     +R  R H+NGG AC+SD+SA+LE+LQSLIP++++ EG  RR+E+LF++TADYI      VFVLQRLIEFYGSD+RENAVS+
Subjt:  WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFYGSDERENAVSA
A0A6J5UGL2 Uncharacterized protein1.5e-0946.67Show/hide
Query:  MSWKQSTRRAVLRSRYGSRILRA-RRIHKNGG---KACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVF------VLQRLIEFYGSDERE
        ++ ++ TRR   R R GSR   A RR   NGG   K  S  VSA+LE L+SLI   + G+    +++ELFQETADYIV       +LQRL+E YGS E+E
Subjt:  MSWKQSTRRAVLRSRYGSRILRA-RRIHKNGG---KACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVF------VLQRLIEFYGSDERE

Query:  NAVSA
        N  +A
Subjt:  NAVSA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29370.1 unknown protein4.9e-0537.76Show/hide
Query:  KQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFY--GSDERENAV
        K  T R   R+   SR         NG       V  +L AL+SL+P   N  G    +EELFQETA+YI      V VL++LIE Y   SD++++ V
Subjt:  KQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYI------VFVLQRLIEFY--GSDERENAV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGA
CGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCG
TGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCATGGAAGCAATCAACGAGAAGAGCGGTTTTGCGATCGAGGTACGGTTCTAGGATCCTCAGAGCTCGTAGAATCCACAAAAATGGCGGAAAAGCGTGCTCATCAGA
CGTATCGGCGAGGCTTGAGGCGCTCCAGAGTCTCATTCCGACTCAGAACAACGGCGAAGGACATCACCGGAGATCGGAGGAGTTGTTTCAAGAGACGGCGGATTACATCG
TGTTCGTCTTGCAGAGGCTGATCGAGTTTTACGGATCCGATGAGAGAGAAAATGCCGTATCAGCGTAG
Protein sequenceShow/hide protein sequence
MSWKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRSEELFQETADYIVFVLQRLIEFYGSDERENAVSA