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Carg20448 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20448
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnuclear factor Y, subunit C13
Genome locationCarg_Chr12:309865..310110
RNA-Seq ExpressionCarg20448
SyntenyCarg20448
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]1.8e-2683.75Show/hide
Query:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        GRVK +MK+DKDIGKVNSEAL IVSCATE+FLKLLAEKSA+V AEKKRK VKLEHI + VKRHR +SDFLLDSLPLPSQP
Subjt:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

KAG6598611.1 Dr1-associated corepressor, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2579.01Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        MGR+K +MK+DKDIGKVNSEAL +VSCATE+FL+LLAEKS++V AEKKRK VKLEHI I VKRH+ +SDFLLDSLPLPSQP
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

KAG7020142.1 hypothetical protein SDJN02_16824, partial [Cucurbita argyrosperma subsp. argyrosperma]9.0e-34100Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

XP_008445504.1 PREDICTED: dr1-associated corepressor [Cucumis melo]3.1e-2682.5Show/hide
Query:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        GRVK +MK+DKDIGKVNSEAL +VSCATE+FLKLLAEKSA+V AEKKRK VKLEHI + VKRHR +SDFLLDSLPLPSQP
Subjt:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]5.3e-2680.25Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        MGR+K +MK+DKDIGKVNSEAL +VSCATE+FL+LLAEKSA+V AEKKRK VKLEHI I VKRH+ +SDFLLDSLPLPSQP
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein7.4e-2681.25Show/hide
Query:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        GRVK +MK+DKDIGKVNSEAL +VSCATE+FLKLLAEKSA+  AEKKRK VKLEHI + VKRHR +SDFLLDSLPLPSQP
Subjt:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

A0A1S3BDL4 dr1-associated corepressor1.5e-2682.5Show/hide
Query:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        GRVK +MK+DKDIGKVNSEAL +VSCATE+FLKLLAEKSA+V AEKKRK VKLEHI + VKRHR +SDFLLDSLPLPSQP
Subjt:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

A0A5A7VG98 Dr1-associated corepressor8.8e-2783.75Show/hide
Query:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        GRVK +MK+DKDIGKVNSEAL IVSCATE+FLKLLAEKSA+V AEKKRK VKLEHI + VKRHR +SDFLLDSLPLPSQP
Subjt:  GRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

A0A6J1HCT3 DNA polymerase epsilon subunit C1.7e-2577.78Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        MGR+K +MK+DKDIGKVNSEAL +VSCATE+FL+LLAEKS++V AEKKRK VKLEHI I VKRH+ + DFLLDSLPLPSQP
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

A0A6J1K737 DNA polymerase epsilon subunit C2.6e-2680.25Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        MGR+K +MK+DKDIGKVNSEAL +VSCATE+FL+LLAEKSA+V AEKKRK VKLEHI I VKRH+ +SDFLLDSLPLPSQP
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G08970.1 nuclear factor Y, subunit C92.7e-0432.89Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLP
        + R+K +MK D+D+  +++EA ++ + A E+F+  L  +S + T E KR+ ++   I   V R  +  DFL+D +P
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLP

AT1G08970.3 nuclear factor Y, subunit C92.7e-0432.89Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLP
        + R+K +MK D+D+  +++EA ++ + A E+F+  L  +S + T E KR+ ++   I   V R  +  DFL+D +P
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLP

AT1G08970.4 nuclear factor Y, subunit C92.7e-0432.89Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLP
        + R+K +MK D+D+  +++EA ++ + A E+F+  L  +S + T E KR+ ++   I   V R  +  DFL+D +P
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLP

AT1G54830.2 nuclear factor Y, subunit C32.7e-0432.89Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLP
        + R+K +MK D+D+  +++EA ++ + A E+F+  L  +S + T E KR+ ++   I   V R  +  DFL+D +P
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLP

AT5G43250.1 nuclear factor Y, subunit C135.3e-2467.9Show/hide
Query:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP
        +GRVK +MK+DKDI K+NSEAL +++ +TE+FL  LAEKSA VTAEKKRK V L+H+ I VKRH+  SDFLLDSLPLP+QP
Subjt:  MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACGAGTGAAGATGATGATGAAGATCGATAAGGACATCGGTAAAGTGAATTCAGAAGCCCTGCTTATAGTCTCATGCGCCACCGAGGTCTTCCTCAAGCTTCTTGC
TGAAAAATCTGCAGATGTCACCGCTGAGAAGAAACGGAAGATCGTGAAGCTTGAACACATCGGAATCATCGTCAAGAGGCATCGACTGATGAGTGATTTTCTCCTCGATT
CGCTTCCTCTTCCATCTCAGCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGACGAGTGAAGATGATGATGAAGATCGATAAGGACATCGGTAAAGTGAATTCAGAAGCCCTGCTTATAGTCTCATGCGCCACCGAGGTCTTCCTCAAGCTTCTTGC
TGAAAAATCTGCAGATGTCACCGCTGAGAAGAAACGGAAGATCGTGAAGCTTGAACACATCGGAATCATCGTCAAGAGGCATCGACTGATGAGTGATTTTCTCCTCGATT
CGCTTCCTCTTCCATCTCAGCCGTAG
Protein sequenceShow/hide protein sequence
MGRVKMMMKIDKDIGKVNSEALLIVSCATEVFLKLLAEKSADVTAEKKRKIVKLEHIGIIVKRHRLMSDFLLDSLPLPSQP