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Carg20454 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20454
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box/kelch-repeat protein
Genome locationCarg_Chr12:274345..274899
RNA-Seq ExpressionCarg20454
SyntenyCarg20454
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064737.1 F-box/kelch-repeat protein [Cucumis melo var. makuwa]2.4e-2481.82Show/hide
Query:  GILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
        GIL MHR R N  KLQ+ITHTAISSK  REF GMDFESDWTRH KSSAFAA VIRSATSFM WSCRIPIS+GY EFL
Subjt:  GILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL

KAE8647234.1 hypothetical protein Csa_019002, partial [Cucumis sativus]3.4e-3482.98Show/hide
Query:  FKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
        F WK WGANLASSMALTGIL MHR R + IKLQ+ITHTA SSK+ REF GMDFESDWTRH KSSAFAA VIRSATSFM WSCRIPIS+GYHEFL
Subjt:  FKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL

KAG2706649.1 hypothetical protein I3760_05G113500 [Carya illinoinensis]1.5e-1867.07Show/hide
Query:  MALTGILAMHRERGNSIKLQSITHTAISSKYN-REFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
        MALT I AM  E  +S+ L+SI        ++ ++ SGM+FESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPI +GYHEFL
Subjt:  MALTGILAMHRERGNSIKLQSITHTAISSKYN-REFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL

KAG6585216.1 hypothetical protein SDJN03_17949, partial [Cucurbita argyrosperma subsp. sororia]1.2e-5099.03Show/hide
Query:  ISDFQFLSIFKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYH
        +SDFQFLSIFKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYH
Subjt:  ISDFQFLSIFKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYH

Query:  EFL
        EFL
Subjt:  EFL

KAG7020136.1 hypothetical protein SDJN02_16818 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-80100Show/hide
Query:  MNSFWFYILFSYHFKLGPYNSCDLGLKVIINRFVFAFDIKRVIFMTFHISDFQFLSIFKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSK
        MNSFWFYILFSYHFKLGPYNSCDLGLKVIINRFVFAFDIKRVIFMTFHISDFQFLSIFKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSK
Subjt:  MNSFWFYILFSYHFKLGPYNSCDLGLKVIINRFVFAFDIKRVIFMTFHISDFQFLSIFKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSK

Query:  YNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
        YNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
Subjt:  YNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL

TrEMBL top hitse value%identityAlignment
A0A0A0KD56 Uncharacterized protein1.6e-3482.98Show/hide
Query:  FKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
        F WK WGANLASSMALTGIL MHR R + IKLQ+ITHTA SSK+ REF GMDFESDWTRH KSSAFAA VIRSATSFM WSCRIPIS+GYHEFL
Subjt:  FKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL

A0A444WZZ5 Uncharacterized protein8.4e-1552.87Show/hide
Query:  LASSMALTGILAMHR--ERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
        L SSMA T + AM +   + +S++  S+T    S+  +     M+FESDWT+HRKSSA+ A VIRSATS +PWSCR+PI +GYHEFL
Subjt:  LASSMALTGILAMHR--ERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL

A0A5A7VCL2 F-box/kelch-repeat protein1.2e-2481.82Show/hide
Query:  GILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
        GIL MHR R N  KLQ+ITHTAISSK  REF GMDFESDWTRH KSSAFAA VIRSATSFM WSCRIPIS+GY EFL
Subjt:  GILAMHRERGNSIKLQSITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL

A0A5J5ASN4 Uncharacterized protein3.7e-1859.09Show/hide
Query:  LASSMALTGILAMHRERGNSIKLQ---SITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
        ++S MAL    AM   R NS KL+   ++  T   +      +GMDFESDWT+HRKSSAF A+VIRSATSFMPWSC+IPIS+GYHEFL
Subjt:  LASSMALTGILAMHRERGNSIKLQ---SITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL

A0A5J5AWB6 Uncharacterized protein1.4e-1757.95Show/hide
Query:  LASSMALTGILAMHRERGNSIKLQ---SITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL
        ++SSMAL    AM   R NS KL+   ++  T   +      + MDFESDWT+HRKSSAF A+VIRSATSFMPWSC+IPI +GYHEFL
Subjt:  LASSMALTGILAMHRERGNSIKLQ---SITHTAISSKYNREFSGMDFESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCGTTTTGGTTTTATATCCTTTTTTCATATCATTTTAAGCTTGGACCTTATAATTCTTGTGATCTGGGACTTAAAGTAATAATCAACCGATTTGTATTTGCCTT
TGATATTAAGCGTGTAATCTTTATGACTTTCCATATTTCAGACTTTCAGTTTCTCTCTATTTTCAAATGGAAGTCATGGGGGGCTAACTTGGCGAGTTCTATGGCCTTGA
CTGGTATTTTGGCAATGCATAGAGAAAGAGGGAACTCTATAAAGTTGCAGAGCATCACTCATACTGCCATATCTAGTAAATATAATCGTGAGTTTTCTGGCATGGACTTT
GAATCAGATTGGACAAGACACAGAAAGTCCTCTGCATTTGCTGCTCAAGTGATCCGTTCTGCAACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTAGTAAAGGATA
TCACGAATTTCTTTAA
mRNA sequenceShow/hide mRNA sequence
TATGAACTCGTTTTGGTTTTATATCCTTTTTTCATATCATTTTAAGCTTGGACCTTATAATTCTTGTGATCTGGGACTTAAAGTAATAATCAACCGATTTGTATTTGCCT
TTGATATTAAGCGTGTAATCTTTATGACTTTCCATATTTCAGACTTTCAGTTTCTCTCTATTTTCAAATGGAAGTCATGGGGGGCTAACTTGGCGAGTTCTATGGCCTTG
ACTGGTATTTTGGCAATGCATAGAGAAAGAGGGAACTCTATAAAGTTGCAGAGCATCACTCATACTGCCATATCTAGTAAATATAATCGTGAGTTTTCTGGCATGGACTT
TGAATCAGATTGGACAAGACACAGAAAGTCCTCTGCATTTGCTGCTCAAGTGATCCGTTCTGCAACTTCCTTTATGCCTTGGTCTTGCAGAATCCCAATTAGTAAAGGAT
ATCACGAATTTCTTTAA
Protein sequenceShow/hide protein sequence
MNSFWFYILFSYHFKLGPYNSCDLGLKVIINRFVFAFDIKRVIFMTFHISDFQFLSIFKWKSWGANLASSMALTGILAMHRERGNSIKLQSITHTAISSKYNREFSGMDF
ESDWTRHRKSSAFAAQVIRSATSFMPWSCRIPISKGYHEFL