; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg20498 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20498
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L20
Genome locationCarg_Chr12:122445..124840
RNA-Seq ExpressionCarg20498
SyntenyCarg20498
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER56026.1 50S ribosomal protein L20 [Striga asiatica]6.7e-0434.21Show/hide
Query:  VLQTGSAGAAFQILPALSQQVDREIGGSRDRHFNSGIPSIVGCNVNCSAHSLPGRLPKKGVGSNGGVAAHSPVQRPLIFVIKAVVLSPHEAAIQENSATI
        V +TG AG      PA+ + V+R I      H     P I   +     H L GR+P+    S G V A+ PV  P   + K+VV   H AA++ N+AT+
Subjt:  VLQTGSAGAAFQILPALSQQVDREIGGSRDRHFNSGIPSIVGCNVNCSAHSLPGRLPKKGVGSNGGVAAHSPVQRPLIFVIKAVVLSPHEAAIQENSATI

Query:  ERKALRQDSTSFGI
         R AL ++ T  G+
Subjt:  ERKALRQDSTSFGI

KAG7020093.1 hypothetical protein SDJN02_16775, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-202100Show/hide
Query:  MGDARSRGRTFRDVVLGRGVAGVVQFHCPLVHERRVGRSWKFNSFFQHLQLQLQYNYSDAISGWNELWVTLAASEEPSVTLYWDGASLVSFSSIVLSSMK
        MGDARSRGRTFRDVVLGRGVAGVVQFHCPLVHERRVGRSWKFNSFFQHLQLQLQYNYSDAISGWNELWVTLAASEEPSVTLYWDGASLVSFSSIVLSSMK
Subjt:  MGDARSRGRTFRDVVLGRGVAGVVQFHCPLVHERRVGRSWKFNSFFQHLQLQLQYNYSDAISGWNELWVTLAASEEPSVTLYWDGASLVSFSSIVLSSMK

Query:  GGLVGAGTSAVPLTLWVAVMQSPECTEVLCAPLSIFPFMLPPPSFSSTIRKASSQLSLFRPTELPVSTYTEEEGRDDEISIPITTPATKTAIELTTEITI
        GGLVGAGTSAVPLTLWVAVMQSPECTEVLCAPLSIFPFMLPPPSFSSTIRKASSQLSLFRPTELPVSTYTEEEGRDDEISIPITTPATKTAIELTTEITI
Subjt:  GGLVGAGTSAVPLTLWVAVMQSPECTEVLCAPLSIFPFMLPPPSFSSTIRKASSQLSLFRPTELPVSTYTEEEGRDDEISIPITTPATKTAIELTTEITI

Query:  AIMLPAEIVHSKFNSSFPIQEVNARVSDEAASVEGPCFGLRQAFEDRSRGVLQTGSAGAAFQILPALSQQVDREIGGSRDRHFNSGIPSIVGCNVNCSAH
        AIMLPAEIVHSKFNSSFPIQEVNARVSDEAASVEGPCFGLRQAFEDRSRGVLQTGSAGAAFQILPALSQQVDREIGGSRDRHFNSGIPSIVGCNVNCSAH
Subjt:  AIMLPAEIVHSKFNSSFPIQEVNARVSDEAASVEGPCFGLRQAFEDRSRGVLQTGSAGAAFQILPALSQQVDREIGGSRDRHFNSGIPSIVGCNVNCSAH

Query:  SLPGRLPKKGVGSNGGVAAHSPVQRPLIFVIKAVVLSPHEAAIQENSATIERKALRQDSTSFGIT
        SLPGRLPKKGVGSNGGVAAHSPVQRPLIFVIKAVVLSPHEAAIQENSATIERKALRQDSTSFGIT
Subjt:  SLPGRLPKKGVGSNGGVAAHSPVQRPLIFVIKAVVLSPHEAAIQENSATIERKALRQDSTSFGIT

TrEMBL top hitse value%identityAlignment
A0A5A7RFR7 50S ribosomal protein L203.3e-0434.21Show/hide
Query:  VLQTGSAGAAFQILPALSQQVDREIGGSRDRHFNSGIPSIVGCNVNCSAHSLPGRLPKKGVGSNGGVAAHSPVQRPLIFVIKAVVLSPHEAAIQENSATI
        V +TG AG      PA+ + V+R I      H     P I   +     H L GR+P+    S G V A+ PV  P   + K+VV   H AA++ N+AT+
Subjt:  VLQTGSAGAAFQILPALSQQVDREIGGSRDRHFNSGIPSIVGCNVNCSAHSLPGRLPKKGVGSNGGVAAHSPVQRPLIFVIKAVVLSPHEAAIQENSATI

Query:  ERKALRQDSTSFGI
         R AL ++ T  G+
Subjt:  ERKALRQDSTSFGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGACGCTCGCAGCCGTGGAAGAACCTTCCGTGACGTTGTACTGGGACGGGGCGTCGCTGGTGTCGTTCAGTTCCATTGTCCTCTCGTCCATGAAAGGCGGGTTGG
TCGGAGCTGGAAGTTTAATTCCTTCTTCCAGCATCTACAATTACAATTACAATACAACTACAGTGATGCAATATCTGGATGGAATGAACTATGGGTGACGCTCGCAGCCT
CTGAAGAACCTTCGGTGACGTTGTACTGGGACGGGGCGTCGCTGGTGTCGTTCAGTTCCATTGTCCTCTCGTCCATGAAAGGCGGGTTGGTCGGAGCTGGAACATCTGCA
GTACCTTTGACATTGTGGGTCGCAGTGATGCAGTCTCCTGAGTGCACAGAAGTCCTATGTGCACCACTCTCAATATTCCCTTTTATGCTCCCACCTCCCTCCTTCTCATC
AACCATCAGAAAAGCCTCTTCACAGCTATCTCTCTTCCGTCCGACAGAACTCCCTGTATCAACATACACAGAAGAGGAAGGAAGGGATGATGAAATCTCAATTCCAATCA
CCACACCAGCGACCAAAACAGCAATCGAGCTTACCACTGAGATTACAATTGCTATAATGTTACCTGCAGAGATCGTCCATAGTAAATTCAACTCGAGCTTCCCTATTCAG
GAAGTCAACGCTAGAGTATCTGATGAAGCAGCCAGTGTTGAGGGCCCTTGCTTCGGACTGAGGCAAGCATTTGAGGATAGAAGCAGAGGCGTTTTGCAAACAGGAAGTGC
AGGAGCTGCGTTTCAGATTCTTCCAGCACTGAGCCAACAGGTAGACCGAGAGATTGGAGGTTCCAGGGACAGGCACTTCAACTCTGGCATACCCTCCATTGTTGGGTGCA
ATGTCAACTGCTCGGCCCACAGCCTGCCTGGCCGACTGCCCAAAAAGGGAGTTGGTAGTAATGGAGGTGTTGCCGCACACAGCCCTGTCCAGAGGCCCCTTATATTCGTT
ATAAAAGCTGTAGTTCTCAGCCCTCATGAAGCAGCCATCCAGGAAAATTCGGCCACCATTGAAAGGAAAGCACTGAGGCAGGACAGTACGAGCTTCGGCATAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGACGCTCGCAGCCGTGGAAGAACCTTCCGTGACGTTGTACTGGGACGGGGCGTCGCTGGTGTCGTTCAGTTCCATTGTCCTCTCGTCCATGAAAGGCGGGTTGG
TCGGAGCTGGAAGTTTAATTCCTTCTTCCAGCATCTACAATTACAATTACAATACAACTACAGTGATGCAATATCTGGATGGAATGAACTATGGGTGACGCTCGCAGCCT
CTGAAGAACCTTCGGTGACGTTGTACTGGGACGGGGCGTCGCTGGTGTCGTTCAGTTCCATTGTCCTCTCGTCCATGAAAGGCGGGTTGGTCGGAGCTGGAACATCTGCA
GTACCTTTGACATTGTGGGTCGCAGTGATGCAGTCTCCTGAGTGCACAGAAGTCCTATGTGCACCACTCTCAATATTCCCTTTTATGCTCCCACCTCCCTCCTTCTCATC
AACCATCAGAAAAGCCTCTTCACAGCTATCTCTCTTCCGTCCGACAGAACTCCCTGTATCAACATACACAGAAGAGGAAGGAAGGGATGATGAAATCTCAATTCCAATCA
CCACACCAGCGACCAAAACAGCAATCGAGCTTACCACTGAGATTACAATTGCTATAATGTTACCTGCAGAGATCGTCCATAGTAAATTCAACTCGAGCTTCCCTATTCAG
GAAGTCAACGCTAGAGTATCTGATGAAGCAGCCAGTGTTGAGGGCCCTTGCTTCGGACTGAGGCAAGCATTTGAGGATAGAAGCAGAGGCGTTTTGCAAACAGGAAGTGC
AGGAGCTGCGTTTCAGATTCTTCCAGCACTGAGCCAACAGGTAGACCGAGAGATTGGAGGTTCCAGGGACAGGCACTTCAACTCTGGCATACCCTCCATTGTTGGGTGCA
ATGTCAACTGCTCGGCCCACAGCCTGCCTGGCCGACTGCCCAAAAAGGGAGTTGGTAGTAATGGAGGTGTTGCCGCACACAGCCCTGTCCAGAGGCCCCTTATATTCGTT
ATAAAAGCTGTAGTTCTCAGCCCTCATGAAGCAGCCATCCAGGAAAATTCGGCCACCATTGAAAGGAAAGCACTGAGGCAGGACAGTACGAGCTTCGGCATAACATAA
Protein sequenceShow/hide protein sequence
MGDARSRGRTFRDVVLGRGVAGVVQFHCPLVHERRVGRSWKFNSFFQHLQLQLQYNYSDAISGWNELWVTLAASEEPSVTLYWDGASLVSFSSIVLSSMKGGLVGAGTSA
VPLTLWVAVMQSPECTEVLCAPLSIFPFMLPPPSFSSTIRKASSQLSLFRPTELPVSTYTEEEGRDDEISIPITTPATKTAIELTTEITIAIMLPAEIVHSKFNSSFPIQ
EVNARVSDEAASVEGPCFGLRQAFEDRSRGVLQTGSAGAAFQILPALSQQVDREIGGSRDRHFNSGIPSIVGCNVNCSAHSLPGRLPKKGVGSNGGVAAHSPVQRPLIFV
IKAVVLSPHEAAIQENSATIERKALRQDSTSFGIT