; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg20500 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20500
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHomeobox protein knotted-1-like 6
Genome locationCarg_Chr12:114752..115119
RNA-Seq ExpressionCarg20500
SyntenyCarg20500
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR008422 - Homeobox KN domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020090.1 hypothetical protein SDJN02_16772, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-48100Show/hide
Query:  MMPMLTLMVEPHCYNSQSRRRKESCLKREGKYCWSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNYGYLLAFWIWIIMCLNNLTLRWSA
        MMPMLTLMVEPHCYNSQSRRRKESCLKREGKYCWSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNYGYLLAFWIWIIMCLNNLTLRWSA
Subjt:  MMPMLTLMVEPHCYNSQSRRRKESCLKREGKYCWSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNYGYLLAFWIWIIMCLNNLTLRWSA
TrEMBL top hitse value%identityAlignment
A0A314XZZ9 Homeobox protein knotted-1-like 65.3e-0448Show/hide
Query:  RRRKESCLKREGKYCWSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
        +++K    K++GK C+         PYPTEADKIALAE+TGL   Q+NN+
Subjt:  RRRKESCLKREGKYCWSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
SwissProt top hitse value%identityAlignment
Q84JS6 Homeobox protein knotted-1-like 63.9e-0443.64Show/hide
Query:  SRRRKESCLKREGKYC----WSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
        S+++K+  L RE +      W+        PYPTE DKIALA+ATGL   Q+NN+
Subjt:  SRRRKESCLKREGKYC----WSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
Arabidopsis top hitse value%identityAlignment
AT1G23380.1 KNOTTED1-like homeobox gene 62.8e-0543.64Show/hide
Query:  SRRRKESCLKREGKYC----WSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
        S+++K+  L RE +      W+        PYPTE DKIALA+ATGL   Q+NN+
Subjt:  SRRRKESCLKREGKYC----WSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
AT1G23380.2 KNOTTED1-like homeobox gene 62.8e-0543.64Show/hide
Query:  SRRRKESCLKREGKYC----WSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
        S+++K+  L RE +      W+        PYPTE DKIALA+ATGL   Q+NN+
Subjt:  SRRRKESCLKREGKYC----WSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
AT1G70510.1 KNOTTED-like from Arabidopsis thaliana 28.0e-0541.82Show/hide
Query:  SRRRKESCLKREGKYC----WSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
        S+++K+  L RE +      W+        PYPTE DKI+LAE TGL   Q+NN+
Subjt:  SRRRKESCLKREGKYC----WSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNY
AT4G08150.1 KNOTTED-like from Arabidopsis thaliana5.2e-0460Show/hide
Query:  PYPTEADKIALAEATGLHPNQVNNY
        PYP+E++K+ALAE+TGL   Q+NN+
Subjt:  PYPTEADKIALAEATGLHPNQVNNY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCCAATGCTTACACTTATGGTGGAGCCACATTGCTACAATTCGCAAAGCAGAAGAAGAAAGGAAAGCTGCCTAAAGAGGGAAGGGAAGTACTGCTGGAGTGGTGG
AATGTTCACTACAGATGGCCCATATCCTACGGAAGCCGATAAGATTGCGCTGGCAGAGGCAACGGGACTACACCCCAACCAAGTTAACAATTATGGATACCTTCTCGCAT
TCTGGATCTGGATAATCATGTGCCTCAACAATCTTACGCTACGCTGGAGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCCAATGCTTACACTTATGGTGGAGCCACATTGCTACAATTCGCAAAGCAGAAGAAGAAAGGAAAGCTGCCTAAAGAGGGAAGGGAAGTACTGCTGGAGTGGTGG
AATGTTCACTACAGATGGCCCATATCCTACGGAAGCCGATAAGATTGCGCTGGCAGAGGCAACGGGACTACACCCCAACCAAGTTAACAATTATGGATACCTTCTCGCAT
TCTGGATCTGGATAATCATGTGCCTCAACAATCTTACGCTACGCTGGAGTGCTTGA
Protein sequenceShow/hide protein sequence
MMPMLTLMVEPHCYNSQSRRRKESCLKREGKYCWSGGMFTTDGPYPTEADKIALAEATGLHPNQVNNYGYLLAFWIWIIMCLNNLTLRWSA