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Carg20508 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20508
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpolygalacturonase At1g48100-like isoform X2
Genome locationCarg_Chr12:86858..87309
RNA-Seq ExpressionCarg20508
SyntenyCarg20508
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585162.1 Polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]2.8e-41100Show/hide
Query:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLVGFRKQMYAWLCGVVENGFKLKHSLQLEWMYSFYKG
        MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLVGFRKQMYAWLCGVVENGFKLKHSLQLEWMYSFYKG
Subjt:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLVGFRKQMYAWLCGVVENGFKLKHSLQLEWMYSFYKG
KAG7020082.1 hypothetical protein SDJN02_16764, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-44100Show/hide
Query:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLVGFRKQMYAWLCGVVENGFKLKHSLQLEWMYSFYKGGLSTK
        MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLVGFRKQMYAWLCGVVENGFKLKHSLQLEWMYSFYKGGLSTK
Subjt:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLVGFRKQMYAWLCGVVENGFKLKHSLQLEWMYSFYKGGLSTK
XP_022951189.1 polygalacturonase At1g48100-like isoform X2 [Cucurbita moschata]4.8e-1795.74Show/hide
Query:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLV
        MHRNETIGSKIAKSLVDLEA RCCHYFAGF+LLLSAGFACCDLVPLV
Subjt:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLV
XP_023002776.1 uncharacterized protein LOC111496534 [Cucurbita maxima]8.5e-1489.36Show/hide
Query:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLV
        M RNETIGSKIAK LVDLEA RCCHYFAGF+LLLSAGFA CDLVPLV
Subjt:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLV
TrEMBL top hitse value%identityAlignment
A0A6J1GI03 polygalacturonase At1g48100-like isoform X22.3e-1795.74Show/hide
Query:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLV
        MHRNETIGSKIAKSLVDLEA RCCHYFAGF+LLLSAGFACCDLVPLV
Subjt:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLV
A0A6J1KM92 uncharacterized protein LOC1114965344.1e-1489.36Show/hide
Query:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLV
        M RNETIGSKIAK LVDLEA RCCHYFAGF+LLLSAGFA CDLVPLV
Subjt:  MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAGAAATGAAACGATTGGAAGCAAAATTGCGAAGTCGTTGGTGGATCTCGAAGCTGAAAGATGTTGCCATTATTTTGCAGGCTTCGAGCTTCTTCTCTCAGCTGG
ATTTGCATGTTGTGACTTGGTGCCATTGGTGGGGTTCAGGAAGCAAATGTATGCCTGGCTGTGTGGCGTGGTGGAAAATGGATTTAAATTGAAGCACAGCCTTCAACTAG
AATGGATGTACTCATTCTACAAAGGTGGCCTTTCAACTAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATAGAAATGAAACGATTGGAAGCAAAATTGCGAAGTCGTTGGTGGATCTCGAAGCTGAAAGATGTTGCCATTATTTTGCAGGCTTCGAGCTTCTTCTCTCAGCTGG
ATTTGCATGTTGTGACTTGGTGCCATTGGTGGGGTTCAGGAAGCAAATGTATGCCTGGCTGTGTGGCGTGGTGGAAAATGGATTTAAATTGAAGCACAGCCTTCAACTAG
AATGGATGTACTCATTCTACAAAGGTGGCCTTTCAACTAAATGAATATATGATTAGGTACAAACAATAACAGTCACACACATATTGTACACTCTCTCGCTTTATTTTTAT
ATATTGTAGATTAAAAGCCTGCCATTAACAAATTGGTATGTTGGCTAGC
Protein sequenceShow/hide protein sequence
MHRNETIGSKIAKSLVDLEAERCCHYFAGFELLLSAGFACCDLVPLVGFRKQMYAWLCGVVENGFKLKHSLQLEWMYSFYKGGLSTK