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Carg20518 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20518
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSpermidine synthase
Genome locationCarg_Chr12:17245..19850
RNA-Seq ExpressionCarg20518
SyntenyCarg20518
Gene Ontology termsGO:0006596 - polyamine biosynthetic process (biological process)
GO:0004766 - spermidine synthase activity (molecular function)
InterPro domainsIPR001045 - Spermidine/spermine synthases
IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase
IPR030373 - Polyamine biosynthesis domain, conserved site
IPR030374 - Polyamine biosynthesis domain
IPR035246 - Spermidine synthase, tetramerisation domain
IPR037163 - Spermidine synthase, tetramerisation domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3431739.1 hypothetical protein FNV43_RR26475 [Rhamnella rubrinervis]2.2e-11881.75Show/hide
Query:  LSVKRSRDEDQNG---------TPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQE
        L VKR R+E++NG         T  + + DSIS+VIPGWFSEISPMWPGEAHSLKVEKILF+G SDYQDVMVFQ      VLVLDGVIQLTERDECAYQE
Subjt:  LSVKRSRDEDQNG---------TPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQE

Query:  MIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKMV---SKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGP
        MI HLPLCSI NP KVLVIGGGDGGVLREV+RHSSV+QIDICEIDKMV   SKQFFP+VA+GFEDPRVTLHIGDGVA LKAVPEGTYD +IVDSSDPIGP
Subjt:  MIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKMV---SKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGP

Query:  AQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        AQELFEKPFFES ++A+RPGGVVCTQAESIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYP
Subjt:  AQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

KAG7020072.1 Spermidine synthase 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-145100Show/hide
Query:  MHLSVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQVLVLDGVIQLTERDECAYQEMIAHLPLCSISNP
        MHLSVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQVLVLDGVIQLTERDECAYQEMIAHLPLCSISNP
Subjt:  MHLSVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQVLVLDGVIQLTERDECAYQEMIAHLPLCSISNP

Query:  TKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKMVSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARA
        TKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKMVSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARA
Subjt:  TKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKMVSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARA

Query:  VRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYPRRAFSDDY
        VRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYPRRAFSDDY
Subjt:  VRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYPRRAFSDDY

KJB31268.1 hypothetical protein B456_005G183500 [Gossypium raimondii]6.4e-11880.68Show/hide
Query:  LSVKRSRDEDQNGTP----------------PSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQVLVLDGVIQLTERDECAYQ
        L VKR R++++NG                   S + D ISSVIPGWFSEISPMWPGEAHSLKVEK+LF+G SDYQ+VMVFQVLVLDGVIQLTERDECAYQ
Subjt:  LSVKRSRDEDQNGTP----------------PSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQVLVLDGVIQLTERDECAYQ

Query:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG
        EMI HLPLCSI NP KVLVIGGGDGGVLREVSRHSSV+QIDICEIDKM   VSKQ+FPDVAVG++DPRV LHIGDGVA LKAVPEGTYD IIVDSSDPIG
Subjt:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG

Query:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        PAQELFEKPFFES A+A+RPGGVVCTQAESIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYP
Subjt:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

XP_030961197.1 spermidine synthase 1 [Quercus lobata]1.9e-11782.13Show/hide
Query:  VKRSRDEDQ-----------NGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQE
        VKR R+E++            G+    QPD IS+VIPGWFSEISPMWPGEAHSLKVEKILF+GNS+YQ VMVFQ      VLVLDGVIQLTERDECAYQE
Subjt:  VKRSRDEDQ-----------NGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQE

Query:  MIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGP
        MI HLPLCSISNP KVLVIGGGDGGVLREVSRHSSV+QIDICEIDKM   VSKQFFP VAVG+EDPRVTLHIGDGVA LKAVPEGTYD +IVDSSDPIGP
Subjt:  MIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGP

Query:  AQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        AQELFEKPFFES ARA+RPGGVVCTQAESIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYP
Subjt:  AQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

XP_038702739.1 spermidine synthase [Tripterygium wilfordii]8.3e-11881.44Show/hide
Query:  LSVKRSRDEDQNGTPPSS----------QPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQ
        L VKR R++++NG P ++           PDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRG SDYQDVMVFQ      VLVLDGVIQLTERDECAYQ
Subjt:  LSVKRSRDEDQNGTPPSS----------QPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQ

Query:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG
        EMI HLPLCSI +P KVLVIGGGDGGVLREVSRH SV+ IDICEIDKM   VSK+FFP +AVG+EDPRVTLHIGDGVA LKAVPEGTYD +IVDSSDPIG
Subjt:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG

Query:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        PAQELFEKPFFES A+A+RPGGVVCTQAESIWLHMHIIEDIV NCRQVFKGSVNYAWTTVPTYP
Subjt:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

TrEMBL top hitse value%identityAlignment
A0A068TVD8 PABS domain-containing protein2.6e-11787.45Show/hide
Query:  PDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSISNPTKVLVIGGGDGGVLR
        PD +SSVIPGWFSEISPMWPGEAHSLKVEKILF+G SDYQ+VMVFQ      VLVLDGVIQLTERDECAYQEMIAHLPLCSI +P KVLVIGGGDGGVLR
Subjt:  PDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSISNPTKVLVIGGGDGGVLR

Query:  EVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARAVRPGGVVCTQAE
        EV+RHSSV+QID+CEIDKM   VSKQFFPDVAVGFEDPRV LHIGDGVA LKAVPEGTYD IIVDSSDPIGPAQELFEKPFFES A+A+RPGGVVCTQAE
Subjt:  EVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARAVRPGGVVCTQAE

Query:  SIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYPRRAF
        SIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYPR  F
Subjt:  SIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYPRRAF

A0A0D2PV29 PABS domain-containing protein3.1e-11880.68Show/hide
Query:  LSVKRSRDEDQNGTP----------------PSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQVLVLDGVIQLTERDECAYQ
        L VKR R++++NG                   S + D ISSVIPGWFSEISPMWPGEAHSLKVEK+LF+G SDYQ+VMVFQVLVLDGVIQLTERDECAYQ
Subjt:  LSVKRSRDEDQNGTP----------------PSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQVLVLDGVIQLTERDECAYQ

Query:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG
        EMI HLPLCSI NP KVLVIGGGDGGVLREVSRHSSV+QIDICEIDKM   VSKQ+FPDVAVG++DPRV LHIGDGVA LKAVPEGTYD IIVDSSDPIG
Subjt:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG

Query:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        PAQELFEKPFFES A+A+RPGGVVCTQAESIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYP
Subjt:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

A0A2N9GP81 PABS domain-containing protein2.0e-11780.83Show/hide
Query:  LSVKRSR-DEDQNGTPPSS-----------QPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECA
        L VKR R +E++NG   +S           QPD IS+VIPGWFSEISP+WPGEAHSLKVEKILF+G S+YQ+VMVFQ      VLVLDGVIQLTERDECA
Subjt:  LSVKRSR-DEDQNGTPPSS-----------QPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECA

Query:  YQEMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDP
        YQEMI HLPLCSISNP KVLVIGGGDGGVLREVSRHSS++QIDICEIDKM   VSKQFFP +AVGFEDPRVTLHIGDGVA LKAVPEGTYD ++VDSSDP
Subjt:  YQEMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDP

Query:  IGPAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        IGPAQELFEKPFFES A+A+RPGGVVCTQAESIWLHMHIIEDIVTNCRQ+FKGSVNYAWTTVPTYP
Subjt:  IGPAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

A0A7J7DKK7 Spermidine synthase 14.0e-11881.44Show/hide
Query:  LSVKRSRDEDQNGTPPSS----------QPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQ
        L VKR R++++NG P ++           PDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRG SDYQDVMVFQ      VLVLDGVIQLTERDECAYQ
Subjt:  LSVKRSRDEDQNGTPPSS----------QPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQ

Query:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG
        EMI HLPLCSI +P KVLVIGGGDGGVLREVSRH SV+ IDICEIDKM   VSK+FFP +AVG+EDPRVTLHIGDGVA LKAVPEGTYD +IVDSSDPIG
Subjt:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG

Query:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        PAQELFEKPFFES A+A+RPGGVVCTQAESIWLHMHIIEDIV NCRQVFKGSVNYAWTTVPTYP
Subjt:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

A0A7N2L8U6 PABS domain-containing protein9.0e-11882.13Show/hide
Query:  VKRSRDEDQ-----------NGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQE
        VKR R+E++            G+    QPD IS+VIPGWFSEISPMWPGEAHSLKVEKILF+GNS+YQ VMVFQ      VLVLDGVIQLTERDECAYQE
Subjt:  VKRSRDEDQ-----------NGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQE

Query:  MIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGP
        MI HLPLCSISNP KVLVIGGGDGGVLREVSRHSSV+QIDICEIDKM   VSKQFFP VAVG+EDPRVTLHIGDGVA LKAVPEGTYD +IVDSSDPIGP
Subjt:  MIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGP

Query:  AQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        AQELFEKPFFES ARA+RPGGVVCTQAESIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYP
Subjt:  AQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

SwissProt top hitse value%identityAlignment
O48659 Spermidine synthase 22.0e-11485.34Show/hide
Query:  ISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSISNPTKVLVIGGGDGGVLREVS
        ISS++PGWFSEISP+WPGEAHSLKVEKILF+G SDYQ+V+VFQ      VLVLDGVIQLTERDECAYQEMI HLPLCSI NP KVLVIGGGDGGVLREVS
Subjt:  ISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSISNPTKVLVIGGGDGGVLREVS

Query:  RHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARAVRPGGVVCTQAESIW
        RHSSV+QIDICEIDKM   VSKQFFP+VA+G+EDPRV LH+GDGVA LK VPEGTYD +IVDSSDPIGPAQELFEKPFFES ARA+ PGGVVCTQAESIW
Subjt:  RHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARAVRPGGVVCTQAESIW

Query:  LHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        LHMHIIEDIV+NCRQ+FKGSVNYAWTTVPTYP
Subjt:  LHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

O82147 Spermidine synthase3.9e-11888.09Show/hide
Query:  PDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSISNPTKVLVIGGGDGGVLR
        PD +SSVIPGWFSEISPMWPGEAHSLKVEKILF+G SDYQ+VMVFQ      VLVLDGVIQLTERDECAYQEMIAHLPLCSI +P KVLVIGGGDGGVLR
Subjt:  PDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSISNPTKVLVIGGGDGGVLR

Query:  EVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARAVRPGGVVCTQAE
        EV+RH SV+QIDICEIDKM   VSKQFFPDVAVGFEDPRV LHIGDGVA LKAVPEGTYD IIVDSSDPIGPAQELFEKPFFES A+A+RPGGVVCTQAE
Subjt:  EVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARAVRPGGVVCTQAE

Query:  SIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        SIWLHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYP
Subjt:  SIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

Q96556 Spermidine synthase 11.2e-11485.34Show/hide
Query:  ISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSISNPTKVLVIGGGDGGVLREVS
        ISS++PGWFSEISP+WPGEAHSLKVEKILF+G SDYQ+VMVFQ      VL+LDGVIQLTERDECAYQEMI HLPLCSI NP KVLVIGGGDGGVLREVS
Subjt:  ISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSISNPTKVLVIGGGDGGVLREVS

Query:  RHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARAVRPGGVVCTQAESIW
        RHSSV+QIDICEIDKM   VSKQFFP+VA+G+EDPRV LH+GDGVA LK V EGTYD +IVDSSDPIGPAQELFEKPFFES ARA+RPGGVVCTQAESIW
Subjt:  RHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARAVRPGGVVCTQAESIW

Query:  LHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        LHMHIIEDIV NCRQ+FKGSVNYAWTTVPTYP
Subjt:  LHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

Q9SMB1 Spermidine synthase 11.8e-11580.24Show/hide
Query:  SVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSI
        + KR+R+        + +   IS+VIPGWFSEISPMWPGEAHSLKVEK+LF+G SDYQ+VMVFQ      VLVLDGVIQ+TERDECAYQEMI HLPLCSI
Subjt:  SVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCSI

Query:  SNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFF
         +P KVLVIGGGDGGVLREVSRHSSV+QIDICEIDKM   VSKQFFP +AVGFEDPRV+LHIGDGVA LK  PEGTYD +IVDSSDPIGPAQELFEKPFF
Subjt:  SNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFF

Query:  ESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        +S ARA+RPGGVVCTQAESIWLHMHIIEDIV NCRQVFKGSVNYAWTTVPTYP
Subjt:  ESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

Q9ZTR1 Spermidine synthase 13.0e-11881.25Show/hide
Query:  VKRSRDEDQNGTPPS----SQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPL
        +KR R+++ NG   +     QP+ +SSVIPGWFSEISPMWPGEAHSLKVEKILF+G SDYQDVMVFQ      VL+LDGVIQLTERDECAYQEMI HLPL
Subjt:  VKRSRDEDQNGTPPS----SQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPL

Query:  CSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEK
        CSI NP KVLVIGGGDGGVLREV+RHSSV++IDICEIDKM   VSK++FPD+AVGF DPRVTL+IGDGVA LKA PEGTYD +IVDSSDPIGPAQELFEK
Subjt:  CSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEK

Query:  PFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        PFFES ARA+RPGGVVCTQAESIWLHMHIIEDIV NCRQVFKGSVNYAWTTVPTYP
Subjt:  PFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

Arabidopsis top hitse value%identityAlignment
AT1G23820.1 spermidine synthase 14.3e-11274.71Show/hide
Query:  VKRSRDEDQNGTPPS---------SQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMI
        +KR R+ED NG   +          +P   S+VIPGWFSE+SPMWPGEAHSLKVEK+LF+G SDYQDV+VFQ      VLVLDGVIQLTERDECAYQEMI
Subjt:  VKRSRDEDQNGTPPS---------SQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMI

Query:  AHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQ
         HLPLCSI NP KVLVIGGGDGGVLREV+RH+S++QID+CEIDKM   VSKQFFPDVA+G+EDPRV L IGDGVA LK   EG+YD +IVDSSDPIGPA+
Subjt:  AHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQ

Query:  ELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        ELFEKPFF+S ARA+RPGGVVCTQAES+WLHM IIEDIV+NCR++FKGSVNYAWT+VPTYP
Subjt:  ELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

AT1G23820.2 spermidine synthase 18.6e-11374.81Show/hide
Query:  VKRSRDEDQNGTPPS---------SQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMI
        +KR R+ED NG   +          +P   S+VIPGWFSE+SPMWPGEAHSLKVEK+LF+G SDYQDV+VFQ      VLVLDGVIQLTERDECAYQEMI
Subjt:  VKRSRDEDQNGTPPS---------SQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMI

Query:  AHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQ
         HLPLCSI NP KVLVIGGGDGGVLREV+RH+S++QID+CEIDKM   VSKQFFPDVA+G+EDPRV L IGDGVA LK   EG+YD +IVDSSDPIGPA+
Subjt:  AHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQ

Query:  ELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYPR
        ELFEKPFF+S ARA+RPGGVVCTQAES+WLHM IIEDIV+NCR++FKGSVNYAWT+VPTYPR
Subjt:  ELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYPR

AT1G70310.1 spermidine synthase 26.6e-11376.14Show/hide
Query:  LSVKRSRD----------EDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQ
        L VKR R+          E +NG     +P  +SS+IPGWFSEISPMWPGEAHSLKVEKILF+G SDYQDV+VFQ      VLVLDGVIQLTERDECAYQ
Subjt:  LSVKRSRD----------EDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQ

Query:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG
        EMI HLPLCSISNP KVLVIGGGDGGVLREV+RHSSV+QIDICEIDKM   V+KQ+FP+VAVG+EDPRV L IGDGVA LK   EGTYD +IVDSSDPIG
Subjt:  EMIAHLPLCSISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIG

Query:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        PA+ELFEKPFFES  RA+RPGGVVCTQAES+WLHM IIEDIV+NCR +FKGSVNYAWT+VPTYP
Subjt:  PAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

AT5G53120.1 spermidine synthase 31.7e-9264.17Show/hide
Query:  PSSQPDSISSVIPGWFSE---------------ISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCS
        P       S+V+ GWFSE                +PMWPGEAHSLKVEK+LF+  SD+Q+V+VF+      VLVLDG++QLTE+DECAYQEMIAHLPLCS
Subjt:  PSSQPDSISSVIPGWFSE---------------ISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCS

Query:  ISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPF
        IS+P  VLV+GGGDGGVLRE+SRHSSV+ IDICEIDKM   VSK+FFP++AVGF+DPRV LHIGD    L+  PEG YD IIVDSSDP+GPA  L EKPF
Subjt:  ISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPF

Query:  FESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        FE+ ARA++PGGV+C  AES+WLH H+IED+++ CRQ FK SV+YAW++VPTYP
Subjt:  FESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP

AT5G53120.2 spermidine synthase 31.7e-9264.17Show/hide
Query:  PSSQPDSISSVIPGWFSE---------------ISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCS
        P       S+V+ GWFSE                +PMWPGEAHSLKVEK+LF+  SD+Q+V+VF+      VLVLDG++QLTE+DECAYQEMIAHLPLCS
Subjt:  PSSQPDSISSVIPGWFSE---------------ISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQ------VLVLDGVIQLTERDECAYQEMIAHLPLCS

Query:  ISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPF
        IS+P  VLV+GGGDGGVLRE+SRHSSV+ IDICEIDKM   VSK+FFP++AVGF+DPRV LHIGD    L+  PEG YD IIVDSSDP+GPA  L EKPF
Subjt:  ISNPTKVLVIGGGDGGVLREVSRHSSVKQIDICEIDKM---VSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPF

Query:  FESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP
        FE+ ARA++PGGV+C  AES+WLH H+IED+++ CRQ FK SV+YAW++VPTYP
Subjt:  FESAARAVRPGGVVCTQAESIWLHMHIIEDIVTNCRQVFKGSVNYAWTTVPTYP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTTATCTGTGAAGAGGTCGAGGGACGAAGACCAAAATGGAACTCCACCCTCTTCACAACCTGATTCTATTTCTTCCGTCATCCCCGGATGGTTCTCCGAGATCAG
CCCAATGTGGCCTGGAGAAGCACATTCATTGAAAGTAGAGAAGATTTTATTTCGAGGGAATTCTGACTATCAGGATGTTATGGTCTTTCAGGTTCTTGTTCTGGATGGAG
TCATCCAGCTGACTGAGAGAGATGAATGTGCTTACCAAGAAATGATTGCTCACCTACCACTTTGCTCAATTTCTAATCCGACTAAGGTTTTGGTTATTGGTGGAGGAGAT
GGTGGAGTGCTTCGTGAAGTTTCTCGCCATTCTTCTGTTAAGCAGATAGATATCTGTGAAATTGATAAGATGGTTTCAAAACAATTTTTCCCTGATGTAGCTGTTGGGTT
TGAGGATCCACGGGTCACACTTCATATTGGCGATGGAGTTGCATTGTTAAAGGCTGTCCCCGAAGGGACTTATGATGTTATTATAGTGGATTCTTCTGATCCAATAGGTC
CTGCGCAAGAGCTTTTTGAGAAGCCATTTTTTGAATCCGCTGCCAGAGCTGTTCGACCAGGAGGTGTTGTGTGCACTCAGGCAGAAAGTATATGGCTTCATATGCACATT
ATTGAGGACATAGTCACAAACTGTCGCCAAGTATTCAAAGGCTCAGTAAATTATGCATGGACTACAGTTCCGACGTATCCCAGGCGAGCATTTTCAGATGATTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTTATCTGTGAAGAGGTCGAGGGACGAAGACCAAAATGGAACTCCACCCTCTTCACAACCTGATTCTATTTCTTCCGTCATCCCCGGATGGTTCTCCGAGATCAG
CCCAATGTGGCCTGGAGAAGCACATTCATTGAAAGTAGAGAAGATTTTATTTCGAGGGAATTCTGACTATCAGGATGTTATGGTCTTTCAGGTTCTTGTTCTGGATGGAG
TCATCCAGCTGACTGAGAGAGATGAATGTGCTTACCAAGAAATGATTGCTCACCTACCACTTTGCTCAATTTCTAATCCGACTAAGGTTTTGGTTATTGGTGGAGGAGAT
GGTGGAGTGCTTCGTGAAGTTTCTCGCCATTCTTCTGTTAAGCAGATAGATATCTGTGAAATTGATAAGATGGTTTCAAAACAATTTTTCCCTGATGTAGCTGTTGGGTT
TGAGGATCCACGGGTCACACTTCATATTGGCGATGGAGTTGCATTGTTAAAGGCTGTCCCCGAAGGGACTTATGATGTTATTATAGTGGATTCTTCTGATCCAATAGGTC
CTGCGCAAGAGCTTTTTGAGAAGCCATTTTTTGAATCCGCTGCCAGAGCTGTTCGACCAGGAGGTGTTGTGTGCACTCAGGCAGAAAGTATATGGCTTCATATGCACATT
ATTGAGGACATAGTCACAAACTGTCGCCAAGTATTCAAAGGCTCAGTAAATTATGCATGGACTACAGTTCCGACGTATCCCAGGCGAGCATTTTCAGATGATTATTAACA
TGTCTATTCTGCCTATAGATAGACGTGAACATATCTGGCTGCAACATTTAGAGAACCTGCCCCATTCACTTGACAATGCTGCGCAGCATTAGAATGGTGGTTTGGTTGAA
ATTGAAACCCCAGATTCAATCCATGGTCGGGAGGAGTTGAGAACCTTTCATGTGATATATAACTGACATATATTAGTATTGGTAGTTGGAGTTTTTTTTTTTTTTTTCCT
TCTTACAACTAATTCCTTGAAATTTTGTGGCCCAGTGGAGTGATTGGTTTTATGCTGTGCTCTACCGAGGGACCTGCTGTTGATTTCAAACACCCGATAAATTCAATCGA
TGTTAATGATATTAACAAC
Protein sequenceShow/hide protein sequence
MHLSVKRSRDEDQNGTPPSSQPDSISSVIPGWFSEISPMWPGEAHSLKVEKILFRGNSDYQDVMVFQVLVLDGVIQLTERDECAYQEMIAHLPLCSISNPTKVLVIGGGD
GGVLREVSRHSSVKQIDICEIDKMVSKQFFPDVAVGFEDPRVTLHIGDGVALLKAVPEGTYDVIIVDSSDPIGPAQELFEKPFFESAARAVRPGGVVCTQAESIWLHMHI
IEDIVTNCRQVFKGSVNYAWTTVPTYPRRAFSDDY