; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg20542 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20542
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionserine/arginine-rich splicing factor SC35-like
Genome locationCarg_Chr12:814165..818045
RNA-Seq ExpressionCarg20542
SyntenyCarg20542
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020212.1 Serine/arginine-rich splicing factor SC35 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-145100Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
        NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
        SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Subjt:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

XP_022952012.1 serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita moschata]5.4e-11887.19Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
                  GRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERYDRDRPHRSERERHRSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
        SPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTP+RGRSDDEHSPQRENGSLDDKPV+SRSPSPAKSDAD
Subjt:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD

XP_022952013.1 serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita moschata]1.9e-11887.23Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
                  GRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERYDRDRPHRSERERHRSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
        SPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTP+RGRSDDEHSPQRENGSLDDKPV+SRSPSPAKSDADE
Subjt:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

XP_023002671.1 serine/arginine-rich splicing factor SC35-like isoform X1 [Cucurbita maxima]7.0e-11886.83Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
                  GRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERYDRDRPHRSERE HRSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
        SPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSISPRRTP+RGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
Subjt:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD

XP_023002672.1 serine/arginine-rich splicing factor SC35-like isoform X2 [Cucurbita maxima]2.4e-11886.88Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
                  GRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERYDRDRPHRSERE HRSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
        SPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSISPRRTP+RGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Subjt:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

TrEMBL top hitse value%identityAlignment
A0A6J1GJ79 serine/arginine-rich splicing factor SC35-like isoform X12.6e-11887.19Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
                  GRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERYDRDRPHRSERERHRSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
        SPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTP+RGRSDDEHSPQRENGSLDDKPV+SRSPSPAKSDAD
Subjt:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD

A0A6J1GJA8 serine/arginine-rich splicing factor SC35-like isoform X29.0e-11987.23Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
                  GRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERYDRDRPHRSERERHRSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
        SPD NKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTP+RGRSDDEHSPQRENGSLDDKPV+SRSPSPAKSDADE
Subjt:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

A0A6J1K6Z8 serine/arginine-rich splicing factor SC35-like isoform X11.1e-10883.1Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
                  GRMLDGREIMVQFAKYGPNAEKIRKGKVME SSSK RGRSRSRSPRPRHRDDYRDRDYRRRS SRSRER+DRDRPHRSERER+RSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDD-ERRSASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
        SPDR KDRRR RDD ERRSAS SDRSMSP RHSPDTRRSISPRRT P+RGRSD+EHSP+R+NGS DDKPVDSRSPSPAKSDADE
Subjt:  SPDRNKDRRRERDD-ERRSASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

A0A6J1KK62 serine/arginine-rich splicing factor SC35-like isoform X21.2e-11886.88Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
                  GRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERYDRDRPHRSERE HRSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
        SPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSISPRRTP+RGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
Subjt:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

A0A6J1KLY6 serine/arginine-rich splicing factor SC35-like isoform X13.4e-11886.83Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA
                  GRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRS SRSRERYDRDRPHRSERE HRSRSRSA
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSA

Query:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
        SPDRNKDRRRERDDER SASRS+RSMSPTRHSPDTRRSISPRRTP+RGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD
Subjt:  SPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDAD

SwissProt top hitse value%identityAlignment
P30352 Serine/arginine-rich splicing factor 28.3e-2139.54Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +D                         
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF

Query:  GFLLCSLGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSAS
               G +LDGRE+ VQ A+YG  P++   R+G       S   GR RSRSPR R R   R R    RS SRSR RY R +     R R RSRSRS S
Subjt:  GFLLCSLGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSAS

Query:  PDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSL
          R+  R + +     RS SRS RS S +R  P T    S R + +R RS        E G++
Subjt:  PDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSL

Q01130 Serine/arginine-rich splicing factor 23.2e-2038.78Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +D                         
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF

Query:  GFLLCSLGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSAS
               G +LDGRE+ VQ A+YG  P++   R+G           GR RSRSPR R R   R R    RS SRSR RY R +     R R RSRSRS S
Subjt:  GFLLCSLGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSAS

Query:  PDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSL
          R+  R + +     RS SRS RS S +R  P     +S R + +R RS        E G++
Subjt:  PDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSL

Q3MHR5 Serine/arginine-rich splicing factor 23.2e-2038.78Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +D                         
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF

Query:  GFLLCSLGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSAS
               G +LDGRE+ VQ A+YG  P++   R+G           GR RSRSPR R R   R R    RS SRSR RY R +     R R RSRSRS S
Subjt:  GFLLCSLGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSAS

Query:  PDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSL
          R+  R + +     RS SRS RS S +R  P     +S R + +R RS        E G++
Subjt:  PDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSL

Q62093 Serine/arginine-rich splicing factor 23.2e-2038.78Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF
        +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR+    +A+ A+D +D                         
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF

Query:  GFLLCSLGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSAS
               G +LDGRE+ VQ A+YG  P++   R+G           GR RSRSPR R R   R R    RS SRSR RY R +     R R RSRSRS S
Subjt:  GFLLCSLGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSAS

Query:  PDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSL
          R+  R + +     RS SRS RS S +R  P     +S R + +R RS        E G++
Subjt:  PDRNKDRRRERDDE-RRSASRSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSL

Q9FMG4 Serine/arginine-rich splicing factor SC352.7e-5653.07Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRS----------------------RSRSPRPRHRDDYRDRDYRRRSHSRSRE
                  GR++DGREI VQFAKYGPNAEKI KG+V+E      R RS                      RSRSPR R RDDYR++DYR+RS SRS +
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRS----------------------RSRSPRPRHRDDYRDRDYRRRSHSRSRE

Query:  RYDRDRPHRSERE-RHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRE---NGSLDDKPVDSRSP
        R  R+R    +R+ R R+RSRSASPD  +  R   D+E RS SRS  S SP R SP   RS SP++T PAR  S D+ S +R      SL  +    +  
Subjt:  RYDRDRPHRSERE-RHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRE---NGSLDDKPVDSRSP

Query:  SPAKSDADE
        SP+K  + E
Subjt:  SPAKSDADE

Arabidopsis top hitse value%identityAlignment
AT1G55310.1 SC35-like splicing factor 336.8e-1035.21Show/hide
Query:  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDG
        SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A        K+H+                         G +L G
Subjt:  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDG

Query:  REIMVQFAKYGPNAEKIRKGKVMESSSSKTRGR--------SRSRSPRPRH-RDDYRDRDY----RRRSHSRS----RERYDRDRPHRSERERHRSRSRS
        RE+ V FA+   N +K  + +  E    + R R        SRSRSP PR  R   R  DY     RR H RS     ERYD  R +        SR RS
Subjt:  REIMVQFAKYGPNAEKIRKGKVMESSSSKTRGR--------SRSRSPRPRH-RDDYRDRDY----RRRSHSRS----RERYDRDRPHRSERERHRSRSRS

Query:  ASPDRNKDRRRERDDERRSASRSD-RSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE
         +P R K R       RRS SRS  RS SP   SP   RS+SPRR+ +R       SP+R   S   +P  SRS SP     DE
Subjt:  ASPDRNKDRRRERDDERRSASRSD-RSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE

AT3G13570.1 SC35-like splicing factor 30A4.1e-0732.65Show/hide
Query:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF
        FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F+++    +A +A  ++D                         
Subjt:  FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQF

Query:  GFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSASPD
               G +L GRE+ V FA+   N +K  + +  +      R + R RSP PR+    R    RR   SRSR R     P +      R +SRS SP 
Subjt:  GFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSASPD

Query:  RNKDRRRERDDERRSASRSD-------RSMSPTR---HSPDTRRSISPRR----TPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDA
          +DRR E++   RS SRS        RS SP R   HS   RRS+SPR+    TP + RS    SP          P  SRSP+P    A
Subjt:  RNKDRRRERDDERRSASRSD-------RSMSPTR---HSPDTRRSISPRR----TPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDA

AT5G18810.1 SC35-like splicing factor 286.6e-0527.35Show/hide
Query:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGR
        LL+ N+      +DL   F+++G + D+++PR+  TG+ RGF FV+Y+YA++A +A+ ++     NH                           +++ GR
Subjt:  LLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSLGRMLDGR

Query:  EIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERR
        EI + F      AE+ RK      +++ T G               R  DY+R SH   R RY      RS   R    S+    D    RRR R   R 
Subjt:  EIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERR

Query:  SASRSDRS-MSPTRHSPDTRRSISPRRTPARGRS
           R++R   S    SP   R ++P R+    RS
Subjt:  SASRSDRS-MSPTRHSPDTRRSISPRRTPARGRS

AT5G64200.1 ortholog of human splicing factor SC351.9e-5753.07Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRS----------------------RSRSPRPRHRDDYRDRDYRRRSHSRSRE
                  GR++DGREI VQFAKYGPNAEKI KG+V+E      R RS                      RSRSPR R RDDYR++DYR+RS SRS +
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRS----------------------RSRSPRPRHRDDYRDRDYRRRSHSRSRE

Query:  RYDRDRPHRSERE-RHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRE---NGSLDDKPVDSRSP
        R  R+R    +R+ R R+RSRSASPD  +  R   D+E RS SRS  S SP R SP   RS SP++T PAR  S D+ S +R      SL  +    +  
Subjt:  RYDRDRPHRSERE-RHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRE---NGSLDDKPVDSRSP

Query:  SPAKSDADE
        SP+K  + E
Subjt:  SPAKSDADE

AT5G64200.2 ortholog of human splicing factor SC351.9e-5753.07Show/hide
Query:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR
        MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEA KA+++LD                      
Subjt:  MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMR

Query:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRS----------------------RSRSPRPRHRDDYRDRDYRRRSHSRSRE
                  GR++DGREI VQFAKYGPNAEKI KG+V+E      R RS                      RSRSPR R RDDYR++DYR+RS SRS +
Subjt:  NQFGFLLCSLGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRS----------------------RSRSPRPRHRDDYRDRDYRRRSHSRSRE

Query:  RYDRDRPHRSERE-RHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRE---NGSLDDKPVDSRSP
        R  R+R    +R+ R R+RSRSASPD  +  R   D+E RS SRS  S SP R SP   RS SP++T PAR  S D+ S +R      SL  +    +  
Subjt:  RYDRDRPHRSERE-RHRSRSRSASPDRNKDRRRERDDERRSASRSDRSMSPTRHSPDTRRSISPRRT-PARGRSDDEHSPQRE---NGSLDDKPVDSRSP

Query:  SPAKSDADE
        SP+K  + E
Subjt:  SPAKSDADE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGAACCACCGCCGACGATCTTTACCCGCTTTTCGA
CAAGTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAA
TTGACAAGCTTGACGTTCGACCAAAAAATCACGTTAAGCTTGAGCTTTTGGAGTTTAAATTTGATGCTGTTTATATGCGAAACCAATTTGGGTTTCTACTCTGTTCTCTA
GGGCGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGAAGACAAG
GGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGAAGAAGCCACAGTAGAAGCCGGGAGAGATATGATCGTGATA
GACCCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAATAAAGATCGGAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGC
CGCTCCGATAGAAGCATGTCACCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCAGCGAGGGGTAGAAGCGATGATGAACATTCGCCTCA
GAGAGAGAATGGCTCACTAGACGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
AAAATTGTTGGAATTTGTTCCACCAGAGACCTAGTTGAGCCCTGAATCCGCCGCTGACGCTGGTCGCCACTCTCTCCATAGCTGAAATCGATCAGTTGCAGAGAGGAATG
TCGCACTTTGGAAGATCGGGTCCTCCCGATATCAGAGATACTTATTCGCTTCTCGTCCTCAACATCACATTCCGAACCACCGCCGACGATCTTTACCCGCTTTTCGACAA
GTATGGAAAAGTCGTCGACGTCTTCATTCCCAGAGACCGCAGGACTGGGGATTCTCGGGGATTTGCGTTTGTTCGATACAAGTATGCGGACGAAGCACAGAAGGCAATTG
ACAAGCTTGACGTTCGACCAAAAAATCACGTTAAGCTTGAGCTTTTGGAGTTTAAATTTGATGCTGTTTATATGCGAAACCAATTTGGGTTTCTACTCTGTTCTCTAGGG
CGAATGTTGGATGGTAGAGAAATTATGGTTCAATTCGCTAAGTACGGTCCCAATGCTGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCATCGAAGACAAGGGG
CAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGTGATGACTACAGGGATAGGGATTACAGGAGAAGAAGCCACAGTAGAAGCCGGGAGAGATATGATCGTGATAGAC
CCCACAGAAGTGAGAGAGAACGCCATAGAAGTAGGAGTCGTAGTGCTAGTCCTGACCGTAATAAAGATCGGAGGAGAGAAAGAGATGATGAAAGGCGTAGTGCAAGCCGC
TCCGATAGAAGCATGTCACCCACCCGACATTCCCCTGATACTCGGAGAAGCATTTCTCCACGTAGGACACCAGCGAGGGGTAGAAGCGATGATGAACATTCGCCTCAGAG
AGAGAATGGCTCACTAGACGATAAGCCAGTCGATTCTCGTAGCCCATCTCCTGCTAAATCCGATGCCGATGAGTGATCTATAAGTGCCATAGGGATAATATATGAAAGCA
AGGCATTTGATTTTAGAAATTCTTTATGCATTTTATGAACAATCATGGCATCCCAGGGGGATATTTTGCACGAGTGTATCTGCCTTTAGACTCCCAAGGACTGTTGGATG
CCTAGATAGACGTGTAGGATCTTGTTCTTAATTAGTTTGAGTTATTTTTCCCTTTTTTCCCTTTAGATTTCATTTTAGTATCTGTACTATTTACATGCAAAATATGAGTC
TTCCCCAGTGTTTGGTTTTGACCTCCTTAGATGTATAATGAATTGATTCTTCTGCCTTGTATCTTGTCTTTTTGAAACCTATTCACCACATTTTGTAGCTAATATACTTT
CTAACATGGTTGGGTTTATTGATTTAGATGCTCTGTGGATGAATTTGCTCATTGAGTGTCGTTTACAGAAATGTTTACTATGAGCAGGTACAAAGAAAAGCCCTTTGATA
TATCTTTTTGATAATTATTTCACTCATGGTTGAGAACTACAAGTTTAGAACTGTTAGACTGTAGTGATCTTTTACTTTAAAAGGTTTTAAACTATCCTCGAACCTTCTCC
AACATGTAGAACTTGAAATGTAACAGTCCAAGCTCATCGCCTGCAGATATTGCCCGCTTTGAGGTTTCCTTTTTAGGCTTCCCTTCGAGGTTTTTAAATGCGTCTGCTAG
AGAGAGTCACACCCTTACAGAGAGAGTCACACCCTTATAAACGTCCTTGTTGTCTCTTGTTCCTTTCTCC
Protein sequenceShow/hide protein sequence
MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDVRPKNHVKLELLEFKFDAVYMRNQFGFLLCSL
GRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSSKTRGRSRSRSPRPRHRDDYRDRDYRRRSHSRSRERYDRDRPHRSERERHRSRSRSASPDRNKDRRRERDDERRSAS
RSDRSMSPTRHSPDTRRSISPRRTPARGRSDDEHSPQRENGSLDDKPVDSRSPSPAKSDADE