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Carg20579 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20579
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontruncated transcription factor CAULIFLOWER A
Genome locationCarg_Chr12:567291..567982
RNA-Seq ExpressionCarg20579
SyntenyCarg20579
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585253.1 MADS-box protein CMB1, partial [Cucurbita argyrosperma subsp. sororia]8.2e-3295.89Show/hide
Query:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
        L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
Subjt:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

KAG7020175.1 hypothetical protein SDJN02_16858, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-38100Show/hide
Query:  MWLCIPLNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
        MWLCIPLNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
Subjt:  MWLCIPLNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

XP_022951685.1 truncated transcription factor CAULIFLOWER A [Cucurbita moschata]2.4e-3194.52Show/hide
Query:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
        L  +LEESSA LHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
Subjt:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

XP_023002153.1 truncated transcription factor CAULIFLOWER A [Cucurbita maxima]2.0e-3093.15Show/hide
Query:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
        L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQ NNIALENSYNPAEVSNQENAINSEPEGNELP HWMML
Subjt:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

XP_023538103.1 truncated transcription factor CAULIFLOWER A [Cucurbita pepo subsp. pepo]8.2e-3295.89Show/hide
Query:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
        L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
Subjt:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

TrEMBL top hitse value%identityAlignment
A0A0A0KIR6 K-box domain-containing protein5.0e-1968.42Show/hide
Query:  LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALENSYNPAEVSNQENAINSEPEGNELPSHWMML
        L  +LEESSAA+ H+SW++SEPNNL YC QPEAFLQ NN  IALENSYNP EV+N+EN +NS  +GN L SHWM+L
Subjt:  LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALENSYNPAEVSNQENAINSEPEGNELPSHWMML

A0A1S4DVG4 MADS-box protein CMB13.2e-0567.39Show/hide
Query:  LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALEN
        L  +LEESS A+ H+SW++SE NNL YC QPEAFLQ NN  IALEN
Subjt:  LNGQLEESSAAL-HSSWEASEPNNLHYCGQPEAFLQGNN--IALEN

A0A6J1BUY9 truncated transcription factor CAULIFLOWER A2.0e-1564.94Show/hide
Query:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNI-ALENSYNPAEVSNQENAINSEPE---GNELPSHWMML
        L  +LEES+AALH +WEAS+ ++L Y  Q E FLQ NNI ALENSY+PAEVSNQEN INS PE    +  PSHWMML
Subjt:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNI-ALENSYNPAEVSNQENAINSEPE---GNELPSHWMML

A0A6J1GJJ3 truncated transcription factor CAULIFLOWER A1.2e-3194.52Show/hide
Query:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
        L  +LEESSA LHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
Subjt:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

A0A6J1KSQ8 truncated transcription factor CAULIFLOWER A9.8e-3193.15Show/hide
Query:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML
        L  +LEESSAALHSSWEASEPNNLHYCGQPEAFLQ NNIALENSYNPAEVSNQENAINSEPEGNELP HWMML
Subjt:  LNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCTATGTATTCCTTTGAATGGGCAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGA
GGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCGGAGGTTTCAAATCAAGAAAACGCCATAAACTCGGAGCCAGAAGGTAATGAGTTGCCTT
CGCATTGGATGATGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGCTATGTATTCCTTTGAATGGGCAGTTGGAAGAAAGCAGTGCAGCTCTTCATTCATCATGGGAAGCTTCGGAACCCAACAATTTGCATTACTGTGGACAACCTGA
GGCCTTTCTTCAAGGCAATAATATTGCATTGGAAAATAGTTACAATCCAGCGGAGGTTTCAAATCAAGAAAACGCCATAAACTCGGAGCCAGAAGGTAATGAGTTGCCTT
CGCATTGGATGATGCTTTGATCTTATCTTATAAAAATATATTACATTAAACCATACTCTATTTCAACCCATTGTGACAATAATATATGTAGTAATTAATACATGAACCAT
ATATGATCTAATGCTCGATTTTCATCTAATTTTTTGTTCTCGAGTTCGGTTGAAATATGGTTACGTTGTTTAATTTCTTCGGTGGAAGACTGATTTTGGATAGCGAGATT
TGAACCTCTGATCTTGTGATCGAGAGAAACTTACATTGACTTTTGATTTCTCTAGTTGACTTTTGGTCTTTTTGATTGAACGTTGCTAAAAATATGTTGAAATTTGTAAT
TCTCGATTGTATGACTGTATC
Protein sequenceShow/hide protein sequence
MWLCIPLNGQLEESSAALHSSWEASEPNNLHYCGQPEAFLQGNNIALENSYNPAEVSNQENAINSEPEGNELPSHWMML