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Carg20591 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20591
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPHD finger-like domain-containing protein 5B
Genome locationCarg_Chr13:286144..287786
RNA-Seq ExpressionCarg20591
SyntenyCarg20591
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process)
GO:0000502 - proteasome complex (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0036402 - proteasome-activating ATPase activity (molecular function)
InterPro domainsIPR005345 - PHF5-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG0461302.1 hypothetical protein HPP92_021599 [Vanilla planifolia]2.5e-1879.37Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

KAG5566772.1 hypothetical protein RHGRI_002342 [Rhododendron griersonianum]2.5e-1878.12Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKRY
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR+
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKRY

KAG7019126.1 PHD finger-like domain-containing protein 5B, partial [Cucurbita argyrosperma subsp. argyrosperma]7.3e-42100Show/hide
Query:  KQARIAIGPTFVRSVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKRYVLFFGSVRL
        KQARIAIGPTFVRSVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKRYVLFFGSVRL
Subjt:  KQARIAIGPTFVRSVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKRYVLFFGSVRL

KOM33843.1 hypothetical protein LR48_Vigan01g339900 [Vigna angularis]3.3e-1875.76Show/hide
Query:  FVRSVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        F    +G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  FVRSVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

XP_012087832.1 PHD finger-like domain-containing protein 5A [Jatropha curcas]1.9e-1861.62Show/hide
Query:  KQARIAIGPTFVRSVTGSVVICDS---------VCP-----SLYSR---------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        KQA IAIG        G  VICDS         VC      S   R         SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  KQARIAIGPTFVRSVTGSVVICDS---------VCP-----SLYSR---------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

TrEMBL top hitse value%identityAlignment
A0A067JKB3 Uncharacterized protein9.4e-1961.62Show/hide
Query:  KQARIAIGPTFVRSVTGSVVICDS---------VCP-----SLYSR---------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        KQA IAIG        G  VICDS         VC      S   R         SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  KQARIAIGPTFVRSVTGSVVICDS---------VCP-----SLYSR---------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

A0A0L9TTC6 Uncharacterized protein1.6e-1875.76Show/hide
Query:  FVRSVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        F    +G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  FVRSVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

A0A0V0H1B2 Putative ovule protein2.5e-1974.65Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKRYVLFFGSV
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR  L F  V
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKRYVLFFGSV

A0A6J1I5N2 PHD finger-like domain-containing protein 5B2.1e-1879.37Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

M0U7W1 Uncharacterized protein1.6e-1861.62Show/hide
Query:  KQARIAIGPTFVRSVTGSVVICDS---------VCP-----SLYSR---------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        KQ  IAIG        G  VICDS         VC      S  SR         SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  KQARIAIGPTFVRSVTGSVVICDS---------VCP-----SLYSR---------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

SwissProt top hitse value%identityAlignment
P0DI19 PHD finger-like domain-containing protein 5A5.6e-2179.37Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

P83870 PHD finger-like domain-containing protein 5A8.1e-2057.58Show/hide
Query:  KQARIAIGPTFVRSVTGSVVICDS-VCPSLYSR----------------------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        KQA +AIG        G  VICDS V P    R                      SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Subjt:  KQARIAIGPTFVRSVTGSVVICDS-VCPSLYSR----------------------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

P83871 PHD finger-like domain-containing protein 5A8.1e-2057.58Show/hide
Query:  KQARIAIGPTFVRSVTGSVVICDS-VCPSLYSR----------------------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        KQA +AIG        G  VICDS V P    R                      SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Subjt:  KQARIAIGPTFVRSVTGSVVICDS-VCPSLYSR----------------------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

Q0WMV8 PHD finger-like domain-containing protein 5B5.6e-2179.37Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

Q7RTV0 PHD finger-like domain-containing protein 5A8.1e-2057.58Show/hide
Query:  KQARIAIGPTFVRSVTGSVVICDS-VCPSLYSR----------------------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        KQA +AIG        G  VICDS V P    R                      SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Subjt:  KQARIAIGPTFVRSVTGSVVICDS-VCPSLYSR----------------------SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

Arabidopsis top hitse value%identityAlignment
AT1G07170.1 PHF5-like protein4.0e-2279.37Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

AT1G07170.2 PHF5-like protein4.0e-2279.37Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

AT1G07170.3 PHF5-like protein4.0e-2279.37Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR

AT2G30000.1 PHF5-like protein4.0e-2279.37Show/hide
Query:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
        S  G  VIC  V       SDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Subjt:  SVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGCAAGCCAGAATCGCCATTGGGCCGACTTTTGTGAGAAGTGTGACGGGAAGTGTTGTAATATGTGACTCTGTATGTCCGTCCCTGTACTCTCGTTCGGATGCCTACTA
CTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATTGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGTAAGAAATATGGGTTCA
AGAAACGGTATGTCTTGTTCTTTGGAAGTGTTAGGCTA
mRNA sequenceShow/hide mRNA sequence
AAGCAAGCCAGAATCGCCATTGGGCCGACTTTTGTGAGAAGTGTGACGGGAAGTGTTGTAATATGTGACTCTGTATGTCCGTCCCTGTACTCTCGTTCGGATGCCTACTA
CTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATTGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGTAAGAAATATGGGTTCA
AGAAACGGTATGTCTTGTTCTTTGGAAGTGTTAGGCTA
Protein sequenceShow/hide protein sequence
KQARIAIGPTFVRSVTGSVVICDSVCPSLYSRSDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKRYVLFFGSVRL