; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg20619 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20619
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSerine/arginine-rich splicing factor SR45a-like
Genome locationCarg_Chr13:483086..484533
RNA-Seq ExpressionCarg20619
SyntenyCarg20619
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583387.1 Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia]3.2e-5499.15Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLNRSVLEGR ITVEK
Subjt:  KYLNRSVLEGRTITVEK

KAG7019154.1 Serine/arginine-rich splicing factor SR45a [Cucurbita argyrosperma subsp. argyrosperma]1.1e-59100Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEKVNIEPSIIS
        KYLNRSVLEGRTITVEKVNIEPSIIS
Subjt:  KYLNRSVLEGRTITVEKVNIEPSIIS

XP_022964743.1 serine/arginine-rich splicing factor SR45a-like isoform X1 [Cucurbita moschata]1.2e-5398.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLNRSVLEGR ITVEK
Subjt:  KYLNRSVLEGRTITVEK

XP_022964744.1 serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita moschata]1.2e-5398.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLNRSVLEGR ITVEK
Subjt:  KYLNRSVLEGRTITVEK

XP_023522126.1 serine/arginine-rich splicing factor SR45a-like [Cucurbita pepo subsp. pepo]1.2e-5398.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLNRSVLEGR ITVEK
Subjt:  KYLNRSVLEGRTITVEK

TrEMBL top hitse value%identityAlignment
A0A6J1HLT5 serine/arginine-rich splicing factor SR45a-like isoform X15.9e-5498.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLNRSVLEGR ITVEK
Subjt:  KYLNRSVLEGRTITVEK

A0A6J1HP51 serine/arginine-rich splicing factor SR45a-like isoform X25.9e-5498.29Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLNRSVLEGR ITVEK
Subjt:  KYLNRSVLEGRTITVEK

A0A6J1I0W1 serine/arginine-rich splicing factor SR45a-like isoform X41.7e-5397.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLNRSVLEGR ITVEK
Subjt:  KYLNRSVLEGRTITVEK

A0A6J1I361 serine/arginine-rich splicing factor SR45a-like isoform X21.7e-5397.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLNRSVLEGR ITVEK
Subjt:  KYLNRSVLEGRTITVEK

A0A6J1I474 serine/arginine-rich splicing factor SR45a-like isoform X11.7e-5397.44Show/hide
Query:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLS RVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSN+EAERCI
Subjt:  MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLNRSVLEGR ITVEK
Subjt:  KYLNRSVLEGRTITVEK

SwissProt top hitse value%identityAlignment
D3YXK2 Scaffold attachment factor B11.0e-1038.55Show/hide
Query:  GNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNIEPS
        G N +V+GLSS     +L+  FS  G V+   +V +  +  +R +GF+TMS+ +EA +CI +L+++ L G+ I+VEK   EP+
Subjt:  GNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNIEPS

Q10422 Uncharacterized RNA-binding protein C25G10.012.0e-1137.76Show/hide
Query:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK
        + S +  +   +S     EN GN+L+V+G++SR+ + EL++ FS  GTV  V ++ +P T+ SRGFGF++ S+ +EA   I  LN     GR + V+K
Subjt:  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEK

Q14151 Scaffold attachment factor B21.4e-1243.37Show/hide
Query:  GNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNIEPS
        G NL+V+GLSS     +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA +CI +L+R+ L GR I+VEK   EP+
Subjt:  GNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNIEPS

Q80YR5 Scaffold attachment factor B22.8e-1344.58Show/hide
Query:  GNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNIEPS
        G NL+V+GLSS     +L+  FS  G V+   +V +  +  +R +GF+TMS++DEA +CI +L+R+ L GR I+VEK   EPS
Subjt:  GNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEGRTITVEKVNIEPS

Q84TH4 Serine/arginine-rich splicing factor SR45a1.0e-3470Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS RVT+R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRTITVEK
        RCI+ L+ SVL+GR ITVEK
Subjt:  RCIKYLNRSVLEGRTITVEK

Arabidopsis top hitse value%identityAlignment
AT1G07350.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.1e-3670Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS RVT+R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRTITVEK
        RCI+ L+ SVL+GR ITVEK
Subjt:  RCIKYLNRSVLEGRTITVEK

AT1G07350.2 RNA-binding (RRM/RBD/RNP motifs) family protein7.1e-3670Show/hide
Query:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE
        MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS RVT+R+LE HF+ EG V DVHLV DPWTRESRGFGFI+M S  +A 
Subjt:  MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAE

Query:  RCIKYLNRSVLEGRTITVEK
        RCI+ L+ SVL+GR ITVEK
Subjt:  RCIKYLNRSVLEGRTITVEK

AT4G35785.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.6e-3064.66Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIK
        S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS+RVT ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCIK
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIK

Query:  YLNRSVLEGRTITVEK
        YLN+SVLEGR ITVE+
Subjt:  YLNRSVLEGRTITVEK

AT4G35785.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-2964.1Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS+RVT ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLN+SVLEGR ITVE+
Subjt:  KYLNRSVLEGRTITVEK

AT4G35785.3 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-2964.1Show/hide
Query:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI
        S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS+RVT ++LE HF+ EG V    LV +P TR SRGF F+TMSS  +AERCI
Subjt:  SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCI

Query:  KYLNRSVLEGRTITVEK
        KYLN+SVLEGR ITVE+
Subjt:  KYLNRSVLEGRTITVEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTACTCCCGAAGGTCTAGATATTCCCGCTCCCCTTCATATAAACGATCGGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGTCCTTCAAGTGACGT
TGAAAATCCTGGGAACAATTTATACGTCACCGGTTTGTCATCTCGAGTAACTAAAAGAGAGCTAGAGAAGCATTTTTCTGCCGAGGGAACAGTGCTAGATGTTCATCTTG
TGGCTGATCCGTGGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAACGACGAGGCTGAACGATGCATCAAATATCTGAATCGATCTGTACTTGAAGGT
CGTACAATTACTGTAGAAAAGGTAAACATTGAACCAAGTATTATTTCTTAG
mRNA sequenceShow/hide mRNA sequence
AAAACTCTCTGATGCTTTTACTATTGAGCTTGAGAGCCAGACGTTTTATTATTTTGCCGCGAATCGCCGTTCTGTAGGCTGCTGTGATTGAGTGAGAACTGAGAAGAACG
CTCGGTTACCTTGTGCTTCGATTTAGGTTTTGCATTCGTTGATTTGTACGATGTCGTACTCCCGAAGGTCTAGATATTCCCGCTCCCCTTCATATAAACGATCGGTCTCA
AGGTCCCTGTCAAGGTCAAGGAGCCGTTCAAGGAGTCCTTCAAGTGACGTTGAAAATCCTGGGAACAATTTATACGTCACCGGTTTGTCATCTCGAGTAACTAAAAGAGA
GCTAGAGAAGCATTTTTCTGCCGAGGGAACAGTGCTAGATGTTCATCTTGTGGCTGATCCGTGGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTAACG
ACGAGGCTGAACGATGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTACAATTACTGTAGAAAAGGTAAACATTGAACCAAGTATTATTTCTTAG
Protein sequenceShow/hide protein sequence
MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSSRVTKRELEKHFSAEGTVLDVHLVADPWTRESRGFGFITMSSNDEAERCIKYLNRSVLEG
RTITVEKVNIEPSIIS