CuGenDBv2

Gene ID	Carg20635
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Elongin-C
Genome location	Carg_Chr13:564284..565960
RNA-Seq Expression	Carg20635
Synteny	Carg20635
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0070449 - elongin complex (cellular component) GO:0003746 - translation elongation factor activity (molecular function)
InterPro domains	IPR001232 - S-phase kinase-associated protein 1-like IPR011333 - SKP1/BTB/POZ domain superfamily IPR016073 - SKP1 component, POZ domain IPR039948 - Elongin-C

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]

1.1e-46

96.94

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]

5.0e-47

97.96

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]

5.9e-48

100

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022970584.1 elongin-C-like [Cucurbita maxima]

3.3e-46

97.96

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEFLIHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]

1.3e-47

98.98

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY44 Elongin-C

5.4e-47

96.94

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A1S3C6T3 Elongin-C

5.4e-47

96.94

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1DWE1 Elongin-C

2.4e-47

97.96

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1HJP6 Elongin-C

2.9e-48

100

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1I608 Elongin-C

1.6e-46

97.96

Show/hide

Query:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE TVKLISAEGFEFLIHKDAAMVSQTIR MLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

SwissProt top hits

e value

%identity

Alignment

P83940 Elongin-C

1.3e-18

47.83

Show/hide

Query:  VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

P83941 Elongin-C

1.3e-18

47.83

Show/hide

Query:  VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q15369 Elongin-C

1.3e-18

47.83

Show/hide

Query:  VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q2KII4 Elongin-C

1.3e-18

47.83

Show/hide

Query:  VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q9USX9 Elongin-C

1.1e-15

43.16

Show/hide

Query:  KEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL
        ++E V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C+Y ++N ++ +  +  +F I PE+ LEL++ A YL
Subjt:  KEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKE-TEFPIEPELTLELMMAANYL

Arabidopsis top hits

e value

%identity

Alignment

AT5G59140.1 BTB/POZ domain-containing protein

5.4e-39

80.85

Show/hide

Query:  ETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT
        ETVKLIS EGFEF+I ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQYFYW+LQ++ GKETEF IEPELTLELMMAANYLHT
Subjt:  ETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAAGGAAGAGACTGTGAAATTGATCAGCGCTGAGGGTTTCGAGTTCTTGATCCACAAGGATGCTGCCATGGTTTCTCAGACCATTCGAAACATGCTTACTTCCCC
AGGTAATTTTGCTGAATCGCAACACAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTTACTGGAATCTTCAATTCGCCAGTG
GGAAAGAGACCGAGTTCCCGATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKKEETVKLISAEGFEFLIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFYWNLQFASGKETEFPIEPELTLELMMAANYLHT

Carg20635 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome