; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg20704 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20704
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionpumilio homolog 4 isoform X1
Genome locationCarg_Chr18:9288472..9289309
RNA-Seq ExpressionCarg20704
SyntenyCarg20704
Gene Ontology termsGO:0006417 - regulation of translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR001313 - Pumilio RNA-binding repeat
IPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold
IPR033133 - Pumilio homology domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012910.1 Pumilio-like 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-84100Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP
        ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP
Subjt:  ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP

XP_022138974.1 pumilio homolog 4 isoform X1 [Momordica charantia]2.3e-5785.31Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDD SLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTLIILDIF-SVIATDRDKLACPLQKGELDSRRRRLP
        ER    + + +LD F SV+AT  DKL   LQKGELDSRR   P
Subjt:  ERRSTSLTLIILDIF-SVIATDRDKLACPLQKGELDSRRRRLP

XP_022945302.1 pumilio homolog 4 isoform X1 [Cucurbita moschata]6.5e-8499.39Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP
        ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSR RRLPSHPPGRAVFGLQQGQVSLQLP
Subjt:  ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP

XP_022967018.1 pumilio homolog 4 isoform X1 [Cucurbita maxima]3.0e-8198.17Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTLIILDIF-SVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP
        ERRSTSLTLIILDIF SVIATDRDKLAC LQKGELDSRRRRLPSHPP RAVFGLQQGQVSLQLP
Subjt:  ERRSTSLTLIILDIF-SVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP

XP_023541922.1 pumilio homolog 4 isoform X1 [Cucurbita pepo subsp. pepo]5.0e-8499.39Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP
        ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQ SLQLP
Subjt:  ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP

TrEMBL top hitse value%identityAlignment
A0A0A0KRK1 PUM-HD domain-containing protein4.8e-4893.52Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLL+NEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTG 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLT
         R   S T
Subjt:  ERRSTSLT

A0A1S4DWZ8 pumilio homolog 48.2e-4898.04Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTG 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ER
         R
Subjt:  ER

A0A6J1CBK8 pumilio homolog 4 isoform X11.1e-5785.31Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDD SLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTLIILDIF-SVIATDRDKLACPLQKGELDSRRRRLP
        ER    + + +LD F SV+AT  DKL   LQKGELDSRR   P
Subjt:  ERRSTSLTLIILDIF-SVIATDRDKLACPLQKGELDSRRRRLP

A0A6J1G0F7 pumilio homolog 4 isoform X13.2e-8499.39Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP
        ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSR RRLPSHPPGRAVFGLQQGQVSLQLP
Subjt:  ERRSTSLTLIILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP

A0A6J1HTX6 pumilio homolog 4 isoform X11.5e-8198.17Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTLIILDIF-SVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP
        ERRSTSLTLIILDIF SVIATDRDKLAC LQKGELDSRRRRLPSHPP RAVFGLQQGQVSLQLP
Subjt:  ERRSTSLTLIILDIF-SVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP

SwissProt top hitse value%identityAlignment
Q9LJX4 Pumilio homolog 54.2e-2557.89Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKL
        MSQ K+ASNVVEKCL      ER+ LI EI+G ++E+  L AMMKD F NYVVQKVLE   D   E+++ R+++HL SL++YTYGKHIV+R E+L
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKL

Q9SS47 Pumilio homolog 49.6e-4683.49Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFG PEERQ+L+NE+LG TDENEPLQAMMKDPFGNYVVQKVLE+CDD SL LILSRI+VHLN+LKRYTYGKHIV+RVEKLITTG 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTL
         R   S +L
Subjt:  ERRSTSLTL

Q9ZW02 Pumilio homolog 31.1e-4179.41Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFG PEER+LL+NE+LG+TDENEPLQAMMKD F NYVVQKVLE+CDD   ELIL+RI+VHLN+LK+YTYGKHIV+RVEKL+  G 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ER
         R
Subjt:  ER

Q9ZW06 Pumilio homolog 24.2e-4178.43Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFG PEER+ L+NE+LG+TDENEPLQAMMKD F NYVVQKVLE+CDD   ELIL RI+VHLN+LK+YTYGKHIV+RVEKL+  G 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ER
         R
Subjt:  ER

Q9ZW07 Pumilio homolog 19.3e-4176.47Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFG PEER+LL+NE+LG+TDENEPLQAMMKD F NYVVQKVLE+CDD   ELIL+RI+VHL +LK+YTYGKH+V+R+EKL+  G 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ER
         R
Subjt:  ER

Arabidopsis top hitse value%identityAlignment
AT2G29140.1 pumilio 37.8e-4379.41Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFG PEER+LL+NE+LG+TDENEPLQAMMKD F NYVVQKVLE+CDD   ELIL+RI+VHLN+LK+YTYGKHIV+RVEKL+  G 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ER
         R
Subjt:  ER

AT2G29190.1 pumilio 23.0e-4278.43Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFG PEER+ L+NE+LG+TDENEPLQAMMKD F NYVVQKVLE+CDD   ELIL RI+VHLN+LK+YTYGKHIV+RVEKL+  G 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ER
         R
Subjt:  ER

AT2G29190.2 pumilio 23.0e-4278.43Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFG PEER+ L+NE+LG+TDENEPLQAMMKD F NYVVQKVLE+CDD   ELIL RI+VHLN+LK+YTYGKHIV+RVEKL+  G 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ER
         R
Subjt:  ER

AT2G29200.1 pumilio 16.6e-4276.47Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFG PEER+LL+NE+LG+TDENEPLQAMMKD F NYVVQKVLE+CDD   ELIL+RI+VHL +LK+YTYGKH+V+R+EKL+  G 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ER
         R
Subjt:  ER

AT3G10360.1 pumilio 46.8e-4783.49Show/hide
Query:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG
        MSQQKFASNVVEKCLTFG PEERQ+L+NE+LG TDENEPLQAMMKDPFGNYVVQKVLE+CDD SL LILSRI+VHLN+LKRYTYGKHIV+RVEKLITTG 
Subjt:  MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGG

Query:  ERRSTSLTL
         R   S +L
Subjt:  ERRSTSLTL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCAACAGAAGTTTGCTTCTAATGTTGTGGAGAAGTGTTTAACATTTGGCAGTCCTGAGGAACGTCAACTACTAATTAACGAGATTCTTGGTTCTACCGATGAGAA
TGAGCCCTTGCAGGCAATGATGAAGGATCCGTTCGGGAACTACGTTGTCCAAAAGGTTCTAGAGTCGTGTGATGACCATAGTCTTGAATTAATTCTCTCTCGTATAAGGG
TTCACTTGAACTCCCTCAAGAGGTATACTTACGGTAAACATATCGTATCTCGAGTTGAAAAGCTCATCACAACAGGAGGTGAGAGACGTAGCACTTCTCTTACACTCATA
ATTCTGGATATCTTTAGTGTGATCGCCACAGATCGTGATAAACTTGCCTGTCCTTTGCAGAAAGGAGAATTGGACAGTCGGCGTCGGCGTCTTCCTTCTCATCCTCCCGG
TAGAGCAGTTTTCGGATTGCAGCAAGGTCAGGTCAGTCTCCAGCTGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCAACAGAAGTTTGCTTCTAATGTTGTGGAGAAGTGTTTAACATTTGGCAGTCCTGAGGAACGTCAACTACTAATTAACGAGATTCTTGGTTCTACCGATGAGAA
TGAGCCCTTGCAGGCAATGATGAAGGATCCGTTCGGGAACTACGTTGTCCAAAAGGTTCTAGAGTCGTGTGATGACCATAGTCTTGAATTAATTCTCTCTCGTATAAGGG
TTCACTTGAACTCCCTCAAGAGGTATACTTACGGTAAACATATCGTATCTCGAGTTGAAAAGCTCATCACAACAGGAGGTGAGAGACGTAGCACTTCTCTTACACTCATA
ATTCTGGATATCTTTAGTGTGATCGCCACAGATCGTGATAAACTTGCCTGTCCTTTGCAGAAAGGAGAATTGGACAGTCGGCGTCGGCGTCTTCCTTCTCATCCTCCCGG
TAGAGCAGTTTTCGGATTGCAGCAAGGTCAGGTCAGTCTCCAGCTGCCTTGA
Protein sequenceShow/hide protein sequence
MSQQKFASNVVEKCLTFGSPEERQLLINEILGSTDENEPLQAMMKDPFGNYVVQKVLESCDDHSLELILSRIRVHLNSLKRYTYGKHIVSRVEKLITTGGERRSTSLTLI
ILDIFSVIATDRDKLACPLQKGELDSRRRRLPSHPPGRAVFGLQQGQVSLQLP