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Carg20755 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20755
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChromatin-remodeling ATPase INO80
Genome locationCarg_Chr15:10049506..10050036
RNA-Seq ExpressionCarg20755
SyntenyCarg20755
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0006338 - chromatin remodeling (biological process)
GO:0006351 - transcription, DNA-templated (biological process)
GO:0031011 - Ino80 complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017147.1 hypothetical protein SDJN02_22259, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-42100Show/hide
Query:  MRQTHCSLKEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMMVVKEDGFPFLAVVLILPAAERRTSKSGLYFIVLKIQFPN
        MRQTHCSLKEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMMVVKEDGFPFLAVVLILPAAERRTSKSGLYFIVLKIQFPN
Subjt:  MRQTHCSLKEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMMVVKEDGFPFLAVVLILPAAERRTSKSGLYFIVLKIQFPN
KAG7023938.1 Transcription factor bHLH96 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-0781.25Show/hide
Query:  VDTRQCTSKDAGLRRGWIWWQSHIDWRKERVP
        VD R+C SKDAG RRGWIWW SHIDW+KERVP
Subjt:  VDTRQCTSKDAGLRRGWIWWQSHIDWRKERVP
XP_022925142.1 DNA helicase INO80-like isoform X1 [Cucurbita moschata]4.1e-0565.79Show/hide
Query:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
        + VDTR C SKD GLRRG + W+SHI+WR+ERVPAR +
Subjt:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
XP_022925143.1 DNA helicase INO80-like isoform X2 [Cucurbita moschata]4.1e-0565.79Show/hide
Query:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
        + VDTR C SKD GLRRG + W+SHI+WR+ERVPAR +
Subjt:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
XP_022925146.1 DNA helicase INO80-like isoform X5 [Cucurbita moschata]4.1e-0565.79Show/hide
Query:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
        + VDTR C SKD GLRRG + W+SHI+WR+ERVPAR +
Subjt:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
TrEMBL top hitse value%identityAlignment
A0A6J1EAZ7 Chromatin-remodeling ATPase INO802.0e-0565.79Show/hide
Query:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
        + VDTR C SKD GLRRG + W+SHI+WR+ERVPAR +
Subjt:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
A0A6J1EBE0 Chromatin-remodeling ATPase INO802.0e-0565.79Show/hide
Query:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
        + VDTR C SKD GLRRG + W+SHI+WR+ERVPAR +
Subjt:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
A0A6J1EEE8 Chromatin-remodeling ATPase INO802.0e-0565.79Show/hide
Query:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
        + VDTR C SKD GLRRG + W+SHI+WR+ERVPAR +
Subjt:  KEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCAAACTCACTGTTCCCTGAAGGAGGTAGACACGAGACAGTGTACTAGTAAGGATGCTGGGCTCCGAAGGGGGTGGATTTGGTGGCAGTCCCACATCGATTGGAG
GAAGGAAAGAGTGCCAGCGAGGATGATGGTCGTGAAGGAGGATGGATTCCCCTTTCTTGCGGTGGTTCTCATTCTTCCTGCGGCCGAGAGACGCACCAGCAAATCTGGCC
TCTATTTTATCGTTCTCAAAATCCAATTCCCCAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGCCAAACTCACTGTTCCCTGAAGGAGGTAGACACGAGACAGTGTACTAGTAAGGATGCTGGGCTCCGAAGGGGGTGGATTTGGTGGCAGTCCCACATCGATTGGAG
GAAGGAAAGAGTGCCAGCGAGGATGATGGTCGTGAAGGAGGATGGATTCCCCTTTCTTGCGGTGGTTCTCATTCTTCCTGCGGCCGAGAGACGCACCAGCAAATCTGGCC
TCTATTTTATCGTTCTCAAAATCCAATTCCCCAACTAA
Protein sequenceShow/hide protein sequence
MRQTHCSLKEVDTRQCTSKDAGLRRGWIWWQSHIDWRKERVPARMMVVKEDGFPFLAVVLILPAAERRTSKSGLYFIVLKIQFPN