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Carg20776 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20776
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCarg_Chr15:9913254..9914775
RNA-Seq ExpressionCarg20776
SyntenyCarg20776
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDY45505.1 BnaCnng12640D [Brassica napus]1.8e-4687.72Show/hide
Query:  DLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCY
        +  VRRLG  RRKSGLS L  PLVLRIFTENSIS GPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVY G HSKLITLL+ TFQHRAGVRLYTSCY
Subjt:  DLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCY

Query:  HLAESCVFNKQPLP
        HLAESCVFNKQ LP
Subjt:  HLAESCVFNKQPLP

KAG7017127.1 hypothetical protein SDJN02_22239, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-157100Show/hide
Query:  MSSLDSRLYCDLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHR
        MSSLDSRLYCDLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHR
Subjt:  MSSLDSRLYCDLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHR

Query:  AGVRLYTSCYHLAESCVFNKQPLPSVHREDHPPNSKFFLGSFHLVNYDHSRYYKQIRDYGVCLNGPSNNRAHWAFPGKSPNEDGLGPRFPLPLISYVFFR
        AGVRLYTSCYHLAESCVFNKQPLPSVHREDHPPNSKFFLGSFHLVNYDHSRYYKQIRDYGVCLNGPSNNRAHWAFPGKSPNEDGLGPRFPLPLISYVFFR
Subjt:  AGVRLYTSCYHLAESCVFNKQPLPSVHREDHPPNSKFFLGSFHLVNYDHSRYYKQIRDYGVCLNGPSNNRAHWAFPGKSPNEDGLGPRFPLPLISYVFFR

Query:  FFHSSLLSVNLISSVLSSRLRFLSVSDPWCMRASVDLGSHILRLLVFLTNLFLIYFCFCGKLCAGRDVDER
        FFHSSLLSVNLISSVLSSRLRFLSVSDPWCMRASVDLGSHILRLLVFLTNLFLIYFCFCGKLCAGRDVDER
Subjt:  FFHSSLLSVNLISSVLSSRLRFLSVSDPWCMRASVDLGSHILRLLVFLTNLFLIYFCFCGKLCAGRDVDER

QCD98686.1 hypothetical protein DEO72_LG6g3408 [Vigna unguiculata]2.9e-6089.92Show/hide
Query:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLPSVHREDH
        PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVY G HSKLITLL+PTFQHRAGVRLYTSCYHLAESCVFNKQ LP VHRED 
Subjt:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLPSVHREDH

Query:  PPNSKFFLGSFHLVNYDHSRYYKQIRDYG
        PPNSKFF GSF+LV+YD+SR YK+ RDYG
Subjt:  PPNSKFFLGSFHLVNYDHSRYYKQIRDYG

TKS02677.1 hypothetical protein D5086_0000160780 [Populus alba]2.5e-4395.7Show/hide
Query:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLP
        PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVY G HSKLITLL+PTFQHRAGVRLYTSCYHLAESCVFNKQ LP
Subjt:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLP

YP_009526585.1 hypothetical protein [Ammopiptanthus mongolicus]1.5e-6182.43Show/hide
Query:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLPSVHREDH
        PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVY G HSKLITLL+PTFQHRAGVRLYTSCYHLAESCVFNKQ LP VHRED 
Subjt:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLPSVHREDH

Query:  PPNSKFFLGSFHLVNYDHSRYYKQIRDYG--VCLNG-PSNNRAHWAFP
        PP SKFF GSF+LV+YD+SR YKQ RDYG   CL   P   +A W  P
Subjt:  PPNSKFFLGSFHLVNYDHSRYYKQIRDYG--VCLNG-PSNNRAHWAFP

TrEMBL top hitse value%identityAlignment
A0A078I3U3 BnaCnng12640D protein8.8e-4787.72Show/hide
Query:  DLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCY
        +  VRRLG  RRKSGLS L  PLVLRIFTENSIS GPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVY G HSKLITLL+ TFQHRAGVRLYTSCY
Subjt:  DLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCY

Query:  HLAESCVFNKQPLP
        HLAESCVFNKQ LP
Subjt:  HLAESCVFNKQPLP

A0A0D3DV04 Uncharacterized protein8.8e-4787.72Show/hide
Query:  DLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCY
        +  VRRLG  RRKSGLS L  PLVLRIFTENSIS GPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVY G HSKLITLL+ TFQHRAGVRLYTSCY
Subjt:  DLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCY

Query:  HLAESCVFNKQPLP
        HLAESCVFNKQ LP
Subjt:  HLAESCVFNKQPLP

A0A385G2C2 Uncharacterized protein7.4e-6282.43Show/hide
Query:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLPSVHREDH
        PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVY G HSKLITLL+PTFQHRAGVRLYTSCYHLAESCVFNKQ LP VHRED 
Subjt:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLPSVHREDH

Query:  PPNSKFFLGSFHLVNYDHSRYYKQIRDYG--VCLNG-PSNNRAHWAFP
        PP SKFF GSF+LV+YD+SR YKQ RDYG   CL   P   +A W  P
Subjt:  PPNSKFFLGSFHLVNYDHSRYYKQIRDYG--VCLNG-PSNNRAHWAFP

A0A3P6D2C2 Uncharacterized protein8.8e-4787.72Show/hide
Query:  DLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCY
        +  VRRLG  RRKSGLS L  PLVLRIFTENSIS GPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVY G HSKLITLL+ TFQHRAGVRLYTSCY
Subjt:  DLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCY

Query:  HLAESCVFNKQPLP
        HLAESCVFNKQ LP
Subjt:  HLAESCVFNKQPLP

A0A4D6MF65 Uncharacterized protein1.4e-6089.92Show/hide
Query:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLPSVHREDH
        PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVY G HSKLITLL+PTFQHRAGVRLYTSCYHLAESCVFNKQ LP VHRED 
Subjt:  PLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCYHLAESCVFNKQPLPSVHREDH

Query:  PPNSKFFLGSFHLVNYDHSRYYKQIRDYG
        PPNSKFF GSF+LV+YD+SR YK+ RDYG
Subjt:  PPNSKFFLGSFHLVNYDHSRYYKQIRDYG

SwissProt top hitse value%identityAlignment
Q3BAI2 Uncharacterized protein ORF913.1e-0962.5Show/hide
Query:  VLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKL
        V+RIFT+ SISP    RQ   RY  RAGR L DKEFRYLRTV VTAAV+ G   +L
Subjt:  VLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTCTTGATTCTCGTCTTTACTGCGATCTTCATGTGCGGCGGTTAGGCATCTTTAGACGAAAGAGTGGTCTTTCAAGATTGGTCGTTCCGTTGGTACTCCGCAT
CTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGAA
CAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTGCATTCAAAGCTTATAACACTTCTCATTCCGACCTTCCAGCACCGGGCTGGTGTCAGACTCTACACATCGTGTTAC
CACTTAGCAGAGTCCTGTGTTTTTAATAAACAGCCGCTACCCTCTGTTCACCGAGAGGATCACCCTCCTAATTCGAAGTTTTTTCTTGGAAGTTTCCACCTTGTTAACTA
TGACCACAGTCGCTACTATAAACAGATTCGCGACTATGGCGTGTGTTTAAATGGGCCTTCGAATAATAGAGCCCATTGGGCTTTTCCCGGGAAAAGCCCAAATGAAGATG
GCCTCGGTCCAAGGTTCCCTCTGCCTCTCATTTCATACGTATTCTTTCGGTTCTTTCACTCCTCTCTTTTATCGGTCAATCTCATCTCTTCTGTTCTCTCTTCGCGGTTG
CGGTTTCTTTCTGTTTCCGATCCCTGGTGCATGAGAGCATCGGTAGATCTTGGATCTCATATCCTACGCCTCCTCGTTTTCCTCACGAACCTCTTTCTGATATACTTCTG
CTTTTGTGGCAAACTCTGCGCTGGTCGGGACGTTGACGAACGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCTCTTGATTCTCGTCTTTACTGCGATCTTCATGTGCGGCGGTTAGGCATCTTTAGACGAAAGAGTGGTCTTTCAAGATTGGTCGTTCCGTTGGTACTCCGCAT
CTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGAA
CAGTTAGAGTTACTGCCGCCGTTTACTGGGGCTTGCATTCAAAGCTTATAACACTTCTCATTCCGACCTTCCAGCACCGGGCTGGTGTCAGACTCTACACATCGTGTTAC
CACTTAGCAGAGTCCTGTGTTTTTAATAAACAGCCGCTACCCTCTGTTCACCGAGAGGATCACCCTCCTAATTCGAAGTTTTTTCTTGGAAGTTTCCACCTTGTTAACTA
TGACCACAGTCGCTACTATAAACAGATTCGCGACTATGGCGTGTGTTTAAATGGGCCTTCGAATAATAGAGCCCATTGGGCTTTTCCCGGGAAAAGCCCAAATGAAGATG
GCCTCGGTCCAAGGTTCCCTCTGCCTCTCATTTCATACGTATTCTTTCGGTTCTTTCACTCCTCTCTTTTATCGGTCAATCTCATCTCTTCTGTTCTCTCTTCGCGGTTG
CGGTTTCTTTCTGTTTCCGATCCCTGGTGCATGAGAGCATCGGTAGATCTTGGATCTCATATCCTACGCCTCCTCGTTTTCCTCACGAACCTCTTTCTGATATACTTCTG
CTTTTGTGGCAAACTCTGCGCTGGTCGGGACGTTGACGAACGGTAA
Protein sequenceShow/hide protein sequence
MSSLDSRLYCDLHVRRLGIFRRKSGLSRLVVPLVLRIFTENSISPGPCRRQRGSRYTIRAGRYLCDKEFRYLRTVRVTAAVYWGLHSKLITLLIPTFQHRAGVRLYTSCY
HLAESCVFNKQPLPSVHREDHPPNSKFFLGSFHLVNYDHSRYYKQIRDYGVCLNGPSNNRAHWAFPGKSPNEDGLGPRFPLPLISYVFFRFFHSSLLSVNLISSVLSSRL
RFLSVSDPWCMRASVDLGSHILRLLVFLTNLFLIYFCFCGKLCAGRDVDER