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Carg20777 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20777
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionchromosome transmission fidelity protein 8 homolog
Genome locationCarg_Chr15:9907894..9910188
RNA-Seq ExpressionCarg20777
SyntenyCarg20777
Gene Ontology termsGO:0007064 - mitotic sister chromatid cohesion (biological process)
GO:0031390 - Ctf18 RFC-like complex (cellular component)
InterPro domainsIPR018607 - Chromosome transmission fidelity protein 8


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579684.1 hypothetical protein SDJN03_24132, partial [Cucurbita argyrosperma subsp. sororia]1.8e-6998.59Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRA--SGSAVTGQAT
        GIIRQRILFKTRPKALISKPQPSVKERSRA  SGSAVTGQAT
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRA--SGSAVTGQAT

XP_022929119.1 putative uncharacterized protein DDB_G0287975 [Cucurbita moschata]6.7e-6997.89Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHEL GSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRA--SGSAVTGQAT
        GIIRQRILFKTRPKALISKPQPSVKERSRA  SGSAVTGQAT
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRA--SGSAVTGQAT

XP_022970179.1 putative uncharacterized protein DDB_G0287975 [Cucurbita maxima]1.3e-6997.86Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDR QTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT
        GIIRQR LFKTRPKALISKPQPSVKERSRASGSAVTGQ T
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT

XP_023551664.1 putative uncharacterized protein DDB_G0287975 [Cucurbita pepo subsp. pepo]5.5e-71100Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT
        GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT

XP_038906846.1 putative uncharacterized protein DDB_G0287975 [Benincasa hispida]2.1e-6288.57Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        MQIK+KCNCGETKCLEWAVVELQG+VE Q +F+DRLQ LEIG+LCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKK + VDEDQS D KSA AELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT
        GIIRQRILFKTRPKALISKPQP VKERSRASGSAVTGQ T
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT

TrEMBL top hitse value%identityAlignment
A0A0A0KPT4 Uncharacterized protein1.9e-6186.43Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        M+IK+KCNCGETKCLEWAVVELQG+VE Q +F+DRLQ LEIG+LCRPSAQEVYTFTVGYHELTGSK+ LKKPLLVLKK + VDEDQS DTKS  AELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT
        GIIRQRILFKTRPKALISKPQP VKERSRASGSAVTGQ T
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT

A0A1S3CT18 Uncharacterized protein1.8e-5984.29Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        MQIK+KCNCGETKCLEWAVVELQG+VE Q +F+DR+Q LEIG+LCRPSAQE+YTFTVGYHELTGSKV LKKPLLVLKK + VDEDQS D KS  AELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT
        GIIRQRILFKTRPKALISKP+P VKERSRASGSAV GQ T
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT

A0A5D3BQB7 Uncharacterized protein1.8e-5984.29Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        MQIK+KCNCGETKCLEWAVVELQG+VE Q +F+DR+Q LEIG+LCRPSAQE+YTFTVGYHELTGSKV LKKPLLVLKK + VDEDQS D KS  AELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT
        GIIRQRILFKTRPKALISKP+P VKERSRASGSAV GQ T
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT

A0A6J1EMV0 Uncharacterized protein3.2e-6997.89Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHEL GSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRA--SGSAVTGQAT
        GIIRQRILFKTRPKALISKPQPSVKERSRA  SGSAVTGQAT
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRA--SGSAVTGQAT

A0A6J1I4S6 Uncharacterized protein6.5e-7097.86Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
        MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDR QTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVI

Query:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT
        GIIRQR LFKTRPKALISKPQPSVKERSRASGSAVTGQ T
Subjt:  GIIRQRILFKTRPKALISKPQPSVKERSRASGSAVTGQAT

SwissProt top hitse value%identityAlignment
P0C6T1 Chromosome transmission fidelity protein 8 homolog8.3e-0633.01Show/hide
Query:  EWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +EA+  +   L    +G L   + + +    VG+H L G  + L+KP  VL K     +D     +    +  V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFKTRPKA

Query:  LIS
        +I+
Subjt:  LIS

P0CG11 Chromosome transmission fidelity protein 8 homolog2.4e-0533.98Show/hide
Query:  EWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +EA+ S    L    +G L   + + +    VG+H L G  + L+KP  VL K    ++D       +     V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFKTRPKA

Query:  LIS
        +I+
Subjt:  LIS

P0CG13 Chromosome transmission fidelity protein 8 homolog2.2e-0633.98Show/hide
Query:  EWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +EA+  +   L    +G L   + + +    VG+H L G  + L+KP  VL K    D+D     +       V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFKTRPKA

Query:  LIS
        +I+
Subjt:  LIS

P0CG15 Chromosome transmission fidelity protein 8 homolog2.2e-0633.01Show/hide
Query:  EWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +EA+  +   L    +G L   + + +    VG+H L G  + L+KP  VL K     +D     +    +  V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFKTRPKA

Query:  LIS
        +I+
Subjt:  LIS

Q54JL4 Putative uncharacterized protein DDB_G02879755.6e-1034.53Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLC-RPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKK-------------CVD-ED
        MQI +K     T   EW +++LQG +E    +   L+   +G+L  +P+ ++ ++F +G   L G +VPLKKPLLV+KK K              VD +D
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLC-RPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKK-------------CVD-ED

Query:  QSGDTKSATAELEVIGIIRQRILFKTRPKALISKPQPSV
           + K    E  + GI   +I F TRP   I  PQ SV
Subjt:  QSGDTKSATAELEVIGIIRQRILFKTRPKALISKPQPSV

Arabidopsis top hitse value%identityAlignment
AT5G52220.1 CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).3.9e-3563.03Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCR-PSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEV
        M+I+VKC CGE +C EWA+VELQG+VE Q SF+  +Q LEIG LC   S+Q  YTFTVGYHEL GSKV LKKPLLVLKK       Q  +      ELEV
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCR-PSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEV

Query:  IGIIRQRILFKTRPKALIS
        +GIIR +ILFKTRPK LIS
Subjt:  IGIIRQRILFKTRPKALIS

AT5G52220.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607).3.9e-3563.03Show/hide
Query:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCR-PSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEV
        M+I+VKC CGE +C EWA+VELQG+VE Q SF+  +Q LEIG LC   S+Q  YTFTVGYHEL GSKV LKKPLLVLKK       Q  +      ELEV
Subjt:  MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCR-PSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEV

Query:  IGIIRQRILFKTRPKALIS
        +GIIR +ILFKTRPK LIS
Subjt:  IGIIRQRILFKTRPKALIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATTAAGGTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGTCGTTGAATTGCAAGGCATAGTTGAAGCTCAACCCTCCTTCGAAGATCGCCTTCA
AACCCTCGAAATCGGCGTTCTATGCCGGCCTTCCGCTCAGGAAGTGTATACTTTTACAGTAGGGTACCATGAGCTGACAGGAAGCAAAGTGCCACTGAAGAAGCCATTGT
TGGTGTTGAAGAAAAAGAAGTGCGTGGACGAGGATCAGAGTGGCGATACCAAATCAGCTACTGCAGAGTTGGAAGTCATTGGGATAATCAGGCAGCGGATTCTGTTTAAG
ACCAGACCAAAGGCCCTCATATCCAAACCACAACCATCGGTGAAGGAAAGATCCCGCGCTTCAGGATCTGCAGTGACAGGCCAAGCAACATGA
mRNA sequenceShow/hide mRNA sequence
AATAGCGGGAAGAGCTTTCAGATTTCGCGCCGTTTTTCCGAGTTTCTGTGTCGTCTTCCTCATCAGTGATCAGAGCTTCGTGTTTTCATTTTTCATCTCAAAGCAGCGGA
ATCAAGAATCGGAAGGCGTTGGAAGATGCAGATTAAGGTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGTCGTTGAATTGCAAGGCATAGTTGAAGCTC
AACCCTCCTTCGAAGATCGCCTTCAAACCCTCGAAATCGGCGTTCTATGCCGGCCTTCCGCTCAGGAAGTGTATACTTTTACAGTAGGGTACCATGAGCTGACAGGAAGC
AAAGTGCCACTGAAGAAGCCATTGTTGGTGTTGAAGAAAAAGAAGTGCGTGGACGAGGATCAGAGTGGCGATACCAAATCAGCTACTGCAGAGTTGGAAGTCATTGGGAT
AATCAGGCAGCGGATTCTGTTTAAGACCAGACCAAAGGCCCTCATATCCAAACCACAACCATCGGTGAAGGAAAGATCCCGCGCTTCAGGATCTGCAGTGACAGGCCAAG
CAACATGAACTCTATCTGTGAAGGTGAAATCCATCCATATCTTTTCTGGGTGATGAAGATATCATGGATTAGAGGTCGATATCGAAATTATGAAGATGGAAAGACGTGTT
GGGTAATATTATTGTTCTTTGATGCCTATATAATCTCAGGTACAATTATTGTTCATGCTGTCTACATCCATGTTGATAGAACAGGCATGAATAAAAGGTTAATATCATTA
AGATGAGGGACCCTAGTAGGGTACAATTATTGTCATCCTATTCCTCAATATGCTCAGAGTGGAATAAATTAGTATCCACCTTCTCCATGTCCATGTTTACAAGTATATGA
CATCAAATGATCGACCTAAAAACCATTCTATGGTGATCTTAGTTAGTACATGTGTAGTTGATTTAATTATGA
Protein sequenceShow/hide protein sequence
MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFK
TRPKALISKPQPSVKERSRASGSAVTGQAT