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Carg20781 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20781
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-binding protein SMUBP-2-like
Genome locationCarg_Chr15:9850217..9850832
RNA-Seq ExpressionCarg20781
SyntenyCarg20781
Gene Ontology termsGO:0032508 - DNA duplex unwinding (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR041679 - DNA2/NAM7 helicase-like, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017122.1 DNA-binding protein SMUBP-2, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-73100Show/hide
Query:  MVMRESDYSGLQLPFRLQSSQEGFAKCTCYGSVARTIKSEILCRALLFLIRFDAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQN
        MVMRESDYSGLQLPFRLQSSQEGFAKCTCYGSVARTIKSEILCRALLFLIRFDAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQN
Subjt:  MVMRESDYSGLQLPFRLQSSQEGFAKCTCYGSVARTIKSEILCRALLFLIRFDAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQN

Query:  TFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        TFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
Subjt:  TFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

XP_008467241.1 PREDICTED: DNA-binding protein SMUBP-2 isoform X1 [Cucumis melo]2.3e-3791.95Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGS +GMNPMLPSIN
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

XP_022929095.1 DNA-binding protein SMUBP-2-like [Cucurbita moschata]2.1e-3894.25Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

XP_022969718.1 DNA-binding protein SMUBP-2-like [Cucurbita maxima]2.1e-3894.25Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

XP_023550882.1 DNA-binding protein SMUBP-2-like [Cucurbita pepo subsp. pepo]2.1e-3894.25Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

TrEMBL top hitse value%identityAlignment
A0A1S3CT28 DNA-binding protein SMUBP-2 isoform X11.1e-3791.95Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGS +GMNPMLPSIN
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

A0A1S3CTA1 DNA-binding protein SMUBP-2 isoform X21.1e-3791.95Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGS +GMNPMLPSIN
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

A0A5A7UKQ5 DNA-binding protein SMUBP-2 isoform X11.1e-3791.95Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGS +GMNPMLPSIN
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

A0A6J1ETA2 DNA-binding protein SMUBP-2-like1.0e-3894.25Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

A0A6J1I1T3 DNA-binding protein SMUBP-2-like1.0e-3894.25Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLPSIN

SwissProt top hitse value%identityAlignment
O94247 DNA polymerase alpha-associated DNA helicase A9.2e-0552.63Show/hide
Query:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTI
        VRSN++  VGFL + RR+NVAITR ++H+ ++ DS+T+
Subjt:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTI

P38935 DNA-binding protein SMUBP-26.6e-1151.67Show/hide
Query:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHA
        VRSN  G VGFL + RR+NVA+TRAR+HVA++CDS T+  + FL  L+ +    G V+ A
Subjt:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHA

P40694 DNA-binding protein SMUBP-21.5e-1051.67Show/hide
Query:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHA
        VRSN  G VGFL + RR+NVA+TRAR+HVA++CDS T+  + FL  L+ +    G V+ A
Subjt:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHA

Q60560 DNA-binding protein SMUBP-21.5e-1051.67Show/hide
Query:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHA
        VRSN  G VGFL + RR+NVA+TRAR+HVA++CDS T+  + FL  L+ +    G V+ A
Subjt:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHA

Q9EQN5 DNA-binding protein SMUBP-21.5e-1051.67Show/hide
Query:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHA
        VRSN  G VGFL + RR+NVA+TRAR+HVA++CDS T+  + FL  L+ +    G V+ A
Subjt:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHA

Arabidopsis top hitse value%identityAlignment
AT1G65810.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.7e-0443.75Show/hide
Query:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLL
        VRSN  GA+GFL + +R NVA+TRAR  + ++ + +T+  N  + R L
Subjt:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLL

AT1G65810.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.7e-0443.75Show/hide
Query:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLL
        VRSN  GA+GFL + +R NVA+TRAR  + ++ + +T+  N  + R L
Subjt:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLL

AT2G03270.1 DNA-binding protein, putative2.2e-0947.27Show/hide
Query:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFG
        VRSN+   VGFL D RRMNVA+TR+R+   +VCD+ T+  + FL R++ +    G
Subjt:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFG

AT4G15570.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein5.5e-0538.46Show/hide
Query:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRV-KHAEPGN
        VR+N  G +GFL +SRRMNV ITRA+  V +V  ++T+  +     L+       R+ K ++P N
Subjt:  VRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRV-KHAEPGN

AT5G35970.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein2.7e-3683.33Show/hide
Query:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLP
        DA  +  VRSNNLGAVGFLGDSRRMNVAITRARKHVA+VCDSSTIC NTFLARLLRHIRYFGRVKHA+PG+ GGS +G++PMLP
Subjt:  DAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSDIGMNPMLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATGAGAGAGAGTGATTATAGTGGACTACAACTTCCTTTCCGGTTGCAATCAAGTCAAGAAGGTTTCGCAAAGTGTACGTGCTATGGAAGTGTTGCCAGGACAAT
AAAGAGTGAGATTTTGTGCAGAGCACTCTTGTTTCTTATTCGTTTTGATGCGCATGAGCTACACAAGGTACGGTCGAACAATCTTGGAGCTGTTGGGTTCTTGGGAGACA
GCCGGCGGATGAATGTGGCCATAACGAGGGCAAGAAAGCACGTAGCACTTGTCTGTGATAGCTCGACAATATGTCAAAATACGTTCTTGGCGAGGCTATTACGTCATATA
CGTTATTTTGGAAGAGTGAAGCATGCAGAACCAGGTAATTTTGGAGGATCTGATATTGGAATGAATCCAATGTTGCCATCCATTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGATGAGAGAGAGTGATTATAGTGGACTACAACTTCCTTTCCGGTTGCAATCAAGTCAAGAAGGTTTCGCAAAGTGTACGTGCTATGGAAGTGTTGCCAGGACAAT
AAAGAGTGAGATTTTGTGCAGAGCACTCTTGTTTCTTATTCGTTTTGATGCGCATGAGCTACACAAGGTACGGTCGAACAATCTTGGAGCTGTTGGGTTCTTGGGAGACA
GCCGGCGGATGAATGTGGCCATAACGAGGGCAAGAAAGCACGTAGCACTTGTCTGTGATAGCTCGACAATATGTCAAAATACGTTCTTGGCGAGGCTATTACGTCATATA
CGTTATTTTGGAAGAGTGAAGCATGCAGAACCAGGTAATTTTGGAGGATCTGATATTGGAATGAATCCAATGTTGCCATCCATTAATTAG
Protein sequenceShow/hide protein sequence
MVMRESDYSGLQLPFRLQSSQEGFAKCTCYGSVARTIKSEILCRALLFLIRFDAHELHKVRSNNLGAVGFLGDSRRMNVAITRARKHVALVCDSSTICQNTFLARLLRHI
RYFGRVKHAEPGNFGGSDIGMNPMLPSIN