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Carg20783 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20783
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNADH:ubiquinone oxidoreductase, 17.2kDa subunit
Genome locationCarg_Chr15:9837455..9842746
RNA-Seq ExpressionCarg20783
SyntenyCarg20783
Gene Ontology termsGO:0032981 - mitochondrial respiratory chain complex I assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007572 - Uncharacterised protein family Ycf20
IPR007763 - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579671.1 hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia]1.2e-7699.33Show/hide
Query:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        +VSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

KAG7017120.1 putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-141100Show/hide
Query:  MASVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQGSSSPVLHSQSG
        MASVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQGSSSPVLHSQSG
Subjt:  MASVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQGSSSPVLHSQSG

Query:  TWNRIVVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALG
        TWNRIVVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALG
Subjt:  TWNRIVVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALG

Query:  VNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        VNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Subjt:  VNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

XP_022928979.1 uncharacterized protein ycf20 [Cucurbita moschata]6.0e-7697.99Show/hide
Query:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        +VSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

XP_022969949.1 uncharacterized protein ycf20 [Cucurbita maxima]1.5e-7497.32Show/hide
Query:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        +VSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSL IKAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

XP_023549885.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo]3.5e-7698.66Show/hide
Query:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        +VSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

TrEMBL top hitse value%identityAlignment
A0A0A0KPS1 Uncharacterized protein1.2e-6990.67Show/hide
Query:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDV
        +V T LLNY FTP+ N SYWRYDM+KSRPS PRS  +KAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDV
Subjt:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDV

Query:  IAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        IAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Subjt:  IAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

A0A1S3CT33 uncharacterized protein ycf20 isoform X15.9e-6990Show/hide
Query:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDV
        +V TGLLNY F+ + N+SYWRYDM+KSRPS PRS  +KAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDV
Subjt:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDV

Query:  IAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        IAAVVCVLLTEYVTRFYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Subjt:  IAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

A0A5D3BMH1 Ycf20-like protein isoform X17.4e-6494.07Show/hide
Query:  NASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
        N SYWRYDM+KSRPS PRS  +KAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR
Subjt:  NASYWRYDMIKSRPS-PRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTR

Query:  FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        FYYSRPKVTFP+ALLNNFKMGFTYGLFIDAFKLAS
Subjt:  FYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

A0A6J1ESY7 uncharacterized protein ycf202.9e-7697.99Show/hide
Query:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        +VSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

A0A6J1I440 uncharacterized protein ycf207.2e-7597.32Show/hide
Query:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
        +VSTGLLNYAFTPQKNASYWRYD+IKSRPSPRSL IKAVQDTGGPRRLVDIIRLVPE+SRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI
Subjt:  VVSTGLLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVI

Query:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
Subjt:  AAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

SwissProt top hitse value%identityAlignment
P51214 Uncharacterized protein ycf201.2e-0746.15Show/hide
Query:  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPVALLNNFKMGFTYGLFIDAFKLAS
        G ISLL GF+++  +S   G  G   +IAA + V   E V++  YS + K    + LLNN K+G TYGLF+DAFKL S
Subjt:  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYS-RPKVTFPVALLNNFKMGFTYGLFIDAFKLAS

P72983 Ycf20-like protein4.3e-0835.24Show/hide
Query:  RLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR--PKVTFPVALLNNFKMGFTYGLFIDA
        RL  I+ +  +    +FR+P RR     +S L GF+V   ++ + G     DV+ A   +L  E V R++Y R          +LN FKMG +Y LF++A
Subjt:  RLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSR--PKVTFPVALLNNFKMGFTYGLFIDA

Query:  FKLAS
        FKL S
Subjt:  FKLAS

Q1XDS2 Uncharacterized protein ycf202.5e-0846.15Show/hide
Query:  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPVALLNNFKMGFTYGLFIDAFKLAS
        G ISLL GF+++  +S   G  G   +IAA + V  TE  ++  YS  K +   + L NNFK+G TYGLF+DAFKL S
Subjt:  GGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPK-VTFPVALLNNFKMGFTYGLFIDAFKLAS

Q54MV7 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 124.9e-0453.33Show/hide
Query:  TLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQGSSSP
        TLVGVDK GN+YY+  + Q  YGRHRWVEY   G Y ++  ++ P
Subjt:  TLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQGSSSP

Q9M9M9 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 127.2e-3273.26Show/hide
Query:  SVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQ
        +V +  L++I++KG+G F+R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKL + TQYGRHRWVEYA K RYNASQ
Subjt:  SVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQ

Arabidopsis top hitse value%identityAlignment
AT1G65420.1 Protein of unknown function (DUF565)2.2e-0436.25Show/hide
Query:  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPVALLNNFKMGFTYGLFIDAFKLAS
        LL GFY A  ++   G  G  DV+ A + V   E +    Y +P       K+   V  +N +K G   GLF+DAFKL S
Subjt:  LLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRP-------KVTFPVALLNNFKMGFTYGLFIDAFKLAS

AT3G03100.1 NADH:ubiquinone oxidoreductase, 17.2kDa subunit5.1e-3373.26Show/hide
Query:  SVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQ
        +V +  L++I++KG+G F+R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKL + TQYGRHRWVEYA K RYNASQ
Subjt:  SVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQ

AT3G03100.2 NADH:ubiquinone oxidoreductase, 17.2kDa subunit2.5e-3272.09Show/hide
Query:  SVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQ
        +V +  L++I++KG+G F+R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKL + TQYG HRWVEYA K RYNASQ
Subjt:  SVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQ

AT5G43050.1 Protein of unknown function (DUF565)5.4e-5187.07Show/hide
Query:  IKAVQDTGG--PRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFK
        I+A+Q+T G  PRRL+DIIR VPEISRNYF+ PSRR LFGGISLLGGFYVAQTISLSFGALGVNDVIAAV+CVLLTEYVTRFYYSR  VTFP+ALLNNFK
Subjt:  IKAVQDTGG--PRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFK

Query:  MGFTYGLFIDAFKLAS
        MGFTYGLFIDAFKLAS
Subjt:  MGFTYGLFIDAFKLAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGGTGGTGCGGGGGATTCTGAAGTCGATCAAAGACAAAGGCATCGGTACTTTCTTGAGAGACCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAA
CTTATTGCAAACCAAAATTCACAACATCGGTGCGACACTTGTGGGTGTCGATAAGTTTGGAAATAAATATTACCAGAAGCTCGATGAACAAACTCAATATGGAAGACACA
GGTGGGTTGAATATGCAGAGAAGGGTCGTTATAATGCTTCTCAGGGGAGCAGTTCTCCTGTTCTTCACTCCCAGAGCGGAACTTGGAATCGAATTGTAGTCTCTACTGGC
CTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATATGATAAAATCACGACCATCCCCTCGTAGTCTTTGTATCAAAGCTGTGCAAGATAC
CGGAGGCCCTCGTAGGTTGGTTGATATCATTAGATTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGAAGGGCTCTCTTTGGAGGAATCTCTTTGTTGG
GTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTT
TATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGGTGGTGCGGGGGATTCTGAAGTCGATCAAAGACAAAGGCATCGGTACTTTCTTGAGAGACCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAA
CTTATTGCAAACCAAAATTCACAACATCGGTGCGACACTTGTGGGTGTCGATAAGTTTGGAAATAAATATTACCAGAAGCTCGATGAACAAACTCAATATGGAAGACACA
GGTGGGTTGAATATGCAGAGAAGGGTCGTTATAATGCTTCTCAGGGGAGCAGTTCTCCTGTTCTTCACTCCCAGAGCGGAACTTGGAATCGAATTGTAGTCTCTACTGGC
CTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATATGATAAAATCACGACCATCCCCTCGTAGTCTTTGTATCAAAGCTGTGCAAGATAC
CGGAGGCCCTCGTAGGTTGGTTGATATCATTAGATTGGTGCCTGAGATCTCGAGAAATTACTTTCGAAGTCCTTCAAGAAGGGCTCTCTTTGGAGGAATCTCTTTGTTGG
GTGGGTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTT
TATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA
Protein sequenceShow/hide protein sequence
MASVVRGILKSIKDKGIGTFLRDLKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLDEQTQYGRHRWVEYAEKGRYNASQGSSSPVLHSQSGTWNRIVVSTG
LLNYAFTPQKNASYWRYDMIKSRPSPRSLCIKAVQDTGGPRRLVDIIRLVPEISRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRF
YYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS