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Carg20857 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20857
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCHD3-type chromatin-remodeling factor PICKLE
Genome locationCarg_Chr01:11513919..11514068
RNA-Seq ExpressionCarg20857
SyntenyCarg20857
Gene Ontology termsGO:0005506 - iron ion binding (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608287.1 CHD3-type chromatin-remodeling factor PICKLE, partial [Cucurbita argyrosperma subsp. sororia]3.5e-17100Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
KAG7037640.1 hypothetical protein SDJN02_01269, partial [Cucurbita argyrosperma subsp. argyrosperma]3.5e-17100Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
XP_022940612.1 CHD3-type chromatin-remodeling factor PICKLE [Cucurbita moschata]3.5e-17100Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
XP_022981141.1 CHD3-type chromatin-remodeling factor PICKLE [Cucurbita maxima]3.5e-17100Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
XP_023524018.1 CHD3-type chromatin-remodeling factor PICKLE [Cucurbita pepo subsp. pepo]3.5e-17100Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
TrEMBL top hitse value%identityAlignment
A0A1S4DZ79 CHD3-type chromatin-remodeling factor PICKLE5.7e-1383.67Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRPVYNLDESD++FDYK KKPGS Q+ FE+LER+DK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
A0A5A7VBI4 CHD3-type chromatin-remodeling factor PICKLE5.7e-1383.67Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRPVYNLDESD++FDYK KKPGS Q+ FE+LER+DK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
A0A6J1C6Q2 CHD3-type chromatin-remodeling factor PICKLE5.2e-1485.71Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRP+YNLDESDD+FDYKHKKPGS Q+ FEKL R+DK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
A0A6J1FK38 CHD3-type chromatin-remodeling factor PICKLE1.7e-17100Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
A0A6J1IVQ1 CHD3-type chromatin-remodeling factor PICKLE1.7e-17100Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
        MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK
SwissProt top hitse value%identityAlignment
Q9S775 CHD3-type chromatin-remodeling factor PICKLE3.2e-0560.42Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLERED
        MSSLVERLR+RS+R+PVYNLD+SDDD D+  KK   T ++ E + R D
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLERED
Arabidopsis top hitse value%identityAlignment
AT2G25170.1 chromatin remodeling factor CHD3 (PICKLE)2.3e-0660.42Show/hide
Query:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLERED
        MSSLVERLR+RS+R+PVYNLD+SDDD D+  KK   T ++ E + R D
Subjt:  MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLERED

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGCCTGGTTGAGAGGCTTCGTGTTAGATCAGAACGGAGGCCAGTGTATAATCTCGATGAGTCAGATGACGATTTCGATTATAAGCATAAAAAACCTGGCTCAAC
GCAGGATAAATTTGAAAAACTAGAGCGGGAAGACAAG
mRNA sequenceShow/hide mRNA sequence
AATATGAGTAGCCTGGTTGAGAGGCTTCGTGTTAGATCAGAACGGAGGCCAGTGTATAATCTCGATGAGTCAGATGACGATTTCGATTATAAGCATAAAAAACCTGGCTC
AACGCAGGATAAATTTGAAAAACTAGAGCGGGAAGACAAG
Protein sequenceShow/hide protein sequence
MSSLVERLRVRSERRPVYNLDESDDDFDYKHKKPGSTQDKFEKLEREDK