; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg20869 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20869
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionarabinogalactan peptide 20-like
Genome locationCarg_Chr06:6867158..6867754
RNA-Seq ExpressionCarg20869
SyntenyCarg20869
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597108.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]1.8e-34100Show/hide
Query:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
Subjt:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]3.2e-2382.5Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS--ASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SS ST  AFS  FT FALIFFI+SPLV AHSS  A APAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS--ASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

XP_022934029.1 arabinogalactan peptide 20-like [Cucurbita moschata]3.8e-3297.56Show/hide
Query:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS  APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
Subjt:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

XP_022974647.1 arabinogalactan peptide 16-like [Cucurbita maxima]7.1e-3195.06Show/hide
Query:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSAS  APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
Subjt:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

XP_023538848.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]1.4e-3196.3Show/hide
Query:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS  APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
Subjt:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

TrEMBL top hitse value%identityAlignment
A0A6J1D1D7 arabinogalactan peptide 20-like1.6e-2382.5Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS--ASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SS ST  AFS  FT FALIFFI+SPLV AHSS  A APAPASDGTSIDQGIAYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS--ASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

A0A6J1E8M6 arabinogalactan peptide 16-like3.5e-2379.27Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS----ASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SS+ST  AFSG FT F LI FILSPLV AHSS    A APAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS----ASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

A0A6J1F1F2 arabinogalactan peptide 20-like1.8e-3297.56Show/hide
Query:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
        MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS  APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL
Subjt:  MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFL

A0A6J1IAU1 arabinogalactan peptide 16-like3.4e-3195.06Show/hide
Query:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSAS  APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
Subjt:  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

A0A6J1IQM6 arabinogalactan peptide 20-like1.1e-2176.83Show/hide
Query:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS----ASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN
        +SS+ST  AFSG FT F LI FILSPL+ AHSS    A APAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASS  FFLN
Subjt:  SSSDSTPTAFSGFFTCFALIFFILSPLVHAHSS----ASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 169.7e-1567.19Show/hide
Query:  FTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF
        F  F+ +F ++  L  A S A APAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SSY FF
Subjt:  FTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF

Q8L9T8 Arabinogalactan protein 412.4e-1370.18Show/hide
Query:  FSGFFTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F G  T  ++IF IL P+ HA S+A APAP SDGT+IDQGIAYVLML+ALVLTYLIH
Subjt:  FSGFFTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIH

Q9FK16 Arabinogalactan protein 222.9e-1168Show/hide
Query:  FALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F +I  IL P+  +HSS+ APAP SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  FALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIH

Q9M373 Arabinogalactan protein 203.3e-1569.35Show/hide
Query:  FALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF
        FA +F ++SP   A S A AP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY FF
Subjt:  FALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 166.9e-1667.19Show/hide
Query:  FTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF
        F  F+ +F ++  L  A S A APAP SDGTSIDQGIAY+LM++ALVLTYLIHPLDA SSY FF
Subjt:  FTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA-SSYQFF

AT3G61640.1 arabinogalactan protein 202.4e-1669.35Show/hide
Query:  FALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF
        FA +F ++SP   A S A AP+P SDGTSIDQGIAY+LM++ALVLTYLIHPLDA  SSY FF
Subjt:  FALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDA--SSYQFF

AT5G24105.1 arabinogalactan protein 411.7e-1470.18Show/hide
Query:  FSGFFTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F G  T  ++IF IL P+ HA S+A APAP SDGT+IDQGIAYVLML+ALVLTYLIH
Subjt:  FSGFFTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIH

AT5G53250.1 arabinogalactan protein 222.1e-1268Show/hide
Query:  FALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIH
        F +I  IL P+  +HSS+ APAP SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  FALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCTTCGGC
TTCTGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCAT
CTTCCTACCAATTTTTTCTGAATTGA
mRNA sequenceShow/hide mRNA sequence
TCTCTGTGCTCTGTTTCTATAAAACCAAATCCCCACATTATCCTCCGATCTCTCTTTCTCTCTCTTCTTCATCATTTCTTCCACAGATCTGTTTCTTTGGAGAGGGACAG
CAACAATGGCGTCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATCGCCACTCGTTCACGCGCACTCT
TCGGCTTCTGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGA
TGCATCTTCCTACCAATTTTTTCTGAATTGAGTTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGAAGTAAGGC
CAACTTTCTT
Protein sequenceShow/hide protein sequence
MASSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPASDGTSIDQGIAYVLMLMALVLTYLIHPLDASSYQFFLN