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Carg20871 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20871
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUbiquitin conjugating enzyme
Genome locationCarg_Chr06:6855795..6860775
RNA-Seq ExpressionCarg20871
SyntenyCarg20871
Gene Ontology termsGO:0044267 - cellular protein metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR016135 - Ubiquitin-conjugating enzyme/RWD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028569.1 Ubiquitin-conjugating enzyme E2 28, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-68100Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVAFYWAANILFSCGEVIHLKERPTIKVTSRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTD
        MASKRILKEINDLQKDPSTSCSGGLVAFYWAANILFSCGEVIHLKERPTIKVTSRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTD
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVAFYWAANILFSCGEVIHLKERPTIKVTSRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTD

Query:  RAKYETTTRSWTKKICDGLVCIMGRKA
        RAKYETTTRSWTKKICDGLVCIMGRKA
Subjt:  RAKYETTTRSWTKKICDGLVCIMGRKA

KHG30069.1 Ubiquitin-conjugating enzyme E2-17 kDa [Gossypium arboreum]4.5e-2453.85Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCGEVIHLKE-RPTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANPDDL
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      ++ G     K   P I     +  D     W   L    VLLSICSL TD NPDD 
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCGEVIHLKE-RPTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANPDDL

Query:  LVPEISHLYKTDRAKYETTTRSWTKKICDG
        LVPEI+H+YKTDRAKYETT RSWT+K   G
Subjt:  LVPEISHLYKTDRAKYETTTRSWTKKICDG

PPR93664.1 hypothetical protein GOBAR_AA27008 [Gossypium barbadense]2.7e-2453.79Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANILFS-----CGEVIHLKER-----PTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANP
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+        G V  +  R     P I     +  D     W   L    VLLSICSL TD NP
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANILFS-----CGEVIHLKER-----PTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANP

Query:  DDLLVPEISHLYKTDRAKYETTTRSWTKKICD
        DD LVPEI+H+YKTDRAKYETT RSWT+ +CD
Subjt:  DDLLVPEISHLYKTDRAKYETTTRSWTKKICD

XP_022147329.1 ubiquitin-conjugating enzyme E2-17 kDa-like isoform X2 [Momordica charantia]7.5e-2749.09Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG-----------------------EVIH-------------LKER--PTIKVT
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      ++ G                       +V H             LKE+  P + ++
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG-----------------------EVIH-------------LKER--PTIKVT

Query:  SRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
                GWEGFLFHI VLLSICSL TDANPDD LVPEI+HLYKTDRAKYETT RSWT+K   G
Subjt:  SRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

XP_023538854.1 ubiquitin-conjugating enzyme E2-17 kDa-like isoform X2 [Cucurbita pepo subsp. pepo]7.8e-2454.4Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVAFYWAANILFSCGEVIHLKERPTIKVTSRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTD
        MASKRILKE+NDLQKDPSTSCSG      W ++                             W            +     DANPDDLLVPEISHLYKTD
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVAFYWAANILFSCGEVIHLKERPTIKVTSRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTD

Query:  RAKYETTTRSWTKKICDGLVCIMGR
        RAKYETTTRSWTKKICDGLVCIMGR
Subjt:  RAKYETTTRSWTKKICDGLVCIMGR

TrEMBL top hitse value%identityAlignment
A0A0B0PZW6 Ubiquitin-conjugating enzyme E2-17 kDa2.2e-2453.85Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCGEVIHLKE-RPTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANPDDL
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      ++ G     K   P I     +  D     W   L    VLLSICSL TD NPDD 
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCGEVIHLKE-RPTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANPDDL

Query:  LVPEISHLYKTDRAKYETTTRSWTKKICDG
        LVPEI+H+YKTDRAKYETT RSWT+K   G
Subjt:  LVPEISHLYKTDRAKYETTTRSWTKKICDG

A0A2P5WRD2 UBC core domain-containing protein1.3e-2453.79Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANILFS-----CGEVIHLKER-----PTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANP
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+        G V  +  R     P I     +  D     W   L    VLLSICSL TD NP
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANILFS-----CGEVIHLKER-----PTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANP

Query:  DDLLVPEISHLYKTDRAKYETTTRSWTKKICD
        DD LVPEI+H+YKTDRAKYETT RSWT+ +CD
Subjt:  DDLLVPEISHLYKTDRAKYETTTRSWTKKICD

A0A6A3A0D6 Ubiquitin-conjugating enzyme E2-17 kDa3.8e-2449.66Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL-----------FSCGEVIHLKERPTIKVTSRVDGFF-----NG----------WEGFLFHIL
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+           F    +  L   P I+V  R   F      NG          W   L    
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL-----------FSCGEVIHLKERPTIKVTSRVDGFF-----NG----------WEGFLFHIL

Query:  VLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
        VLLSICSL TD NPDD LVPEI+H+YKTDR+KYETT RSWT+K   G
Subjt:  VLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

A0A6J1D0P3 ubiquitin-conjugating enzyme E2-17 kDa-like isoform X23.6e-2749.09Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG-----------------------EVIH-------------LKER--PTIKVT
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      ++ G                       +V H             LKE+  P + ++
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG-----------------------EVIH-------------LKER--PTIKVT

Query:  SRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
                GWEGFLFHI VLLSICSL TDANPDD LVPEI+HLYKTDRAKYETT RSWT+K   G
Subjt:  SRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

A0A7J8ZRV0 UBC core domain-containing protein (Fragment)4.9e-2454.76Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCGEVIHLKE-RPTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANPDDL
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      ++ G     K   P I     +  D     W   L    VLLSICSL TD NPDD 
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCGEVIHLKE-RPTIKVTSRV--DGFFNGWEGFLFHILVLLSICSLSTDANPDDL

Query:  LVPEISHLYKTDRAKYETTTRSWTKK
        LVPEI+H+YKTDRAKYETT RSWT+K
Subjt:  LVPEISHLYKTDRAKYETTTRSWTKK

SwissProt top hitse value%identityAlignment
P35131 Ubiquitin-conjugating enzyme E2 83.6e-2447.3Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      +S G     IH       + P +   ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTDRAKYE T R+WT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

P35133 Ubiquitin-conjugating enzyme E2 103.1e-2345.95Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      ++ G     IH       + P +   ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTD+ KYE+T RSWT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

P35135 Ubiquitin-conjugating enzyme E2-17 kDa1.2e-2447.97Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCGEV---IHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      ++ G     IH       + P +   ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCGEV---IHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTDRAKYETT RSWT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

Q8S919 Ubiquitin-conjugating enzyme E2 5B2.8e-2446.62Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A ++      ++ G     IH       + P + + ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTDRAKYE+T RSWT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

Q94F47 Ubiquitin-conjugating enzyme E2 281.2e-2447.97Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      +S G     IH       + P +   ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTDRAKYE+T RSWT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

Arabidopsis top hitse value%identityAlignment
AT1G64230.1 ubiquitin-conjugating enzyme 288.8e-2647.97Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      +S G     IH       + P +   ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTDRAKYE+T RSWT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

AT1G64230.2 ubiquitin-conjugating enzyme 288.8e-2647.97Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      +S G     IH       + P +   ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTDRAKYE+T RSWT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

AT5G41700.1 ubiquitin conjugating enzyme 82.6e-2547.3Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      +S G     IH       + P +   ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTDRAKYE T R+WT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

AT5G41700.2 ubiquitin conjugating enzyme 82.6e-2547.3Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      +S G     IH       + P +   ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTDRAKYE T R+WT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG

AT5G41700.5 ubiquitin conjugating enzyme 82.6e-2547.3Show/hide
Query:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI
        MASKRILKE+ DLQKDP TSCS G VA   F+W A I+      +S G     IH       + P +   ++V             D     W   L   
Subjt:  MASKRILKEINDLQKDPSTSCSGGLVA---FYWAANIL------FSCG---EVIHLK-----ERPTIKVTSRV-------------DGFFNGWEGFLFHI

Query:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG
         VLLSICSL TD NPDD LVPEI+H+YKTDRAKYE T R+WT+K   G
Subjt:  LVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRSWTKKICDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGAAACGGATCCTGAAGGAGATCAATGATCTCCAGAAAGATCCTTCTACTTCCTGCAGTGGTGGTTTAGTAGCTTTCTACTGGGCAGCAAATATTTTATTCTC
GTGTGGGGAGGTCATCCATTTAAAAGAACGACCGACTATCAAGGTCACTTCAAGGGTAGATGGGTTTTTCAATGGTTGGGAAGGGTTTCTGTTTCATATTCTGGTGTTAC
TTTCTATTTGCTCCCTTTCGACAGATGCCAACCCAGATGATCTACTAGTGCCAGAAATTTCTCATTTATACAAGACCGATAGGGCCAAGTATGAGACAACTACAAGGAGC
TGGACTAAAAAAATATGCGATGGGCTCGTTTGTATTATGGGAAGGAAGGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGAAACGGATCCTGAAGGAGATCAATGATCTCCAGAAAGATCCTTCTACTTCCTGCAGTGGTGGTTTAGTAGCTTTCTACTGGGCAGCAAATATTTTATTCTC
GTGTGGGGAGGTCATCCATTTAAAAGAACGACCGACTATCAAGGTCACTTCAAGGGTAGATGGGTTTTTCAATGGTTGGGAAGGGTTTCTGTTTCATATTCTGGTGTTAC
TTTCTATTTGCTCCCTTTCGACAGATGCCAACCCAGATGATCTACTAGTGCCAGAAATTTCTCATTTATACAAGACCGATAGGGCCAAGTATGAGACAACTACAAGGAGC
TGGACTAAAAAAATATGCGATGGGCTCGTTTGTATTATGGGAAGGAAGGCCTAA
Protein sequenceShow/hide protein sequence
MASKRILKEINDLQKDPSTSCSGGLVAFYWAANILFSCGEVIHLKERPTIKVTSRVDGFFNGWEGFLFHILVLLSICSLSTDANPDDLLVPEISHLYKTDRAKYETTTRS
WTKKICDGLVCIMGRKA