; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg20898 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20898
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA polymerase II transcriptional coactivator KELP like
Genome locationCarg_Chr06:6676123..6677400
RNA-Seq ExpressionCarg20898
SyntenyCarg20898
Gene Ontology termsGO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR003173 - Transcriptional coactivator p15 (PC4), C-terminal
IPR009044 - ssDNA-binding transcriptional regulator
IPR014876 - DEK, C-terminal
IPR045125 - RNA polymerase II transcriptional coactivator Sub1/Tcp4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597071.1 RNA polymerase II transcriptional coactivator KELP, partial [Cucurbita argyrosperma subsp. sororia]5.4e-49100Show/hide
Query:  MDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGI
        MDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGI
Subjt:  MDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGI

KAG6597077.1 RNA polymerase II transcriptional coactivator KELP, partial [Cucurbita argyrosperma subsp. sororia]1.8e-7694.87Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKGGHYALVCSFPLMVNL
        RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKGGHYAL     L+ +L
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKGGHYALVCSFPLMVNL

KAG7028543.1 RNA polymerase II transcriptional coactivator KELP, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-117100Show/hide
Query:  NFSNRRRKPKRTEFSTNYSTSNRRRPVSFFQPTELHQETAGTVFHFSFNSGIFLFSRNMDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDL
        NFSNRRRKPKRTEFSTNYSTSNRRRPVSFFQPTELHQETAGTVFHFSFNSGIFLFSRNMDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDL
Subjt:  NFSNRRRKPKRTEFSTNYSTSNRRRPVSFFQPTELHQETAGTVFHFSFNSGIFLFSRNMDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDL

Query:  SDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKGG
        SDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKGG
Subjt:  SDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKGG

Query:  HYALVCSFPLMVNLLILP
        HYALVCSFPLMVNLLILP
Subjt:  HYALVCSFPLMVNLLILP

XP_022945450.1 uncharacterized protein LOC111449676 [Cucurbita moschata]1.0e-7199.29Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        MDNETRRRI+ETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
        RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

XP_023539029.1 uncharacterized protein LOC111799782 [Cucurbita pepo subsp. pepo]3.8e-7198.58Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEK+LGMDLSDIQCKCLVR+VVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
        RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

TrEMBL top hitse value%identityAlignment
A0A0A0L3U5 CCHC-type domain-containing protein2.5e-4466.67Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        M++ETRRRIEE VI++LK S+ME+ TE+K+R++ E+RLG+DLS+ QCK LVR+VVE FL S +ER   GKE EPGPS RYENKA EQ+IV KKE N D D
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
         +IC+LSNNR+VT+H+FKG  +VS+RQYYEKDGKQLP +KG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

A0A1S3AV18 uncharacterized protein LOC1034831794.7e-4363.83Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        M++ETRR+IEE VI++LK SN+E+ TE+K+R++ E+R+G+DLS+ QCK LVR+VVE FL S +ER   GKE EPGPS RYEN+A EQ+I+ KKE N D D
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
         +IC+LSNNR+VT+H+FKG  +VSIRQYY KDGKQLP +KG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

A0A5A7TZ44 Zinc knuckle family protein, putative isoform 24.7e-4363.83Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        M++ETRR+IEE VI++LK SN+E+ TE+K+R++ E+R+G+DLS+ QCK LVR+VVE FL S +ER   GKE EPGPS RYEN+A EQ+I+ KKE N D D
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
         +IC+LSNNR+VT+H+FKG  +VSIRQYY KDGKQLP +KG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

A0A5D3DBA1 Zinc knuckle family protein, putative isoform 24.7e-4363.83Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        M++ETRR+IEE VI++LK SN+E+ TE+K+R++ E+R+G+DLS+ QCK LVR+VVE FL S +ER   GKE EPGPS RYEN+A EQ+I+ KKE N D D
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
         +IC+LSNNR+VT+H+FKG  +VSIRQYY KDGKQLP +KG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

A0A6J1G0Z2 uncharacterized protein LOC1114496764.9e-7299.29Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        MDNETRRRI+ETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
        RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

SwissProt top hitse value%identityAlignment
O65154 RNA polymerase II transcriptional coactivator KIWI1.4e-0432.5Show/hide
Query:  TERDDKGKEGEPGPSDRYENKATEQEIVR-KKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
        + R  +  E      D  E  A  +++ +   + +   D V+C +S NR V+V  + G   + IR++Y KDGK LPG KG
Subjt:  TERDDKGKEGEPGPSDRYENKATEQEIVR-KKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

O65155 RNA polymerase II transcriptional coactivator KELP1.3e-2443.97Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        M+ ET+ +IE+TVI++L  S+M+E+TE+K+R  A ++L +DLS+   K  VR VVE FL      +++ +E E    ++ E    +      KE + D D
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
         +IC+LS+ R VT+ EFKG +LVSIR+YY+KDGK+LP  KG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

Q9FHX8 Mediator-associated protein 33.8e-0542.37Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFL
        +D + RR+I++TV  +L+ SN+ ++TE K R EA  +L +DLS    K +V++ VE+FL
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFL

Arabidopsis top hitse value%identityAlignment
AT1G64490.1 DEK, chromatin associated protein1.2e-0642.37Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFL
        +DN+ +++I+ETV  +LK S++ E+TE K R EA   L +DLS    K +VR+ V+ F+
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFL

AT4G00980.1 zinc knuckle (CCHC-type) family protein8.6e-1334.78Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        M+    ++IEETV  +L  S+M++MTE+K+R +A  +LG+DLS    K LVRDV+E FL S          GE    +       E   V    +  + +
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPG
        R IC+LS  +N TV  ++G   +SI    ++ GK   G
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPG

AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP)8.9e-2643.97Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        M+ ET+ +IE+TVI++L  S+M+E+TE+K+R  A ++L +DLS+   K  VR VVE FL      +++ +E E    ++ E    +      KE + D D
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
         +IC+LS+ R VT+ EFKG +LVSIR+YY+KDGK+LP  KG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

AT4G10920.2 transcriptional coactivator p15 (PC4) family protein (KELP)8.9e-2643.97Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD
        M+ ET+ +IE+TVI++L  S+M+E+TE+K+R  A ++L +DLS+   K  VR VVE FL      +++ +E E    ++ E    +      KE + D D
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVD

Query:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG
         +IC+LS+ R VT+ EFKG +LVSIR+YY+KDGK+LP  KG
Subjt:  RVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKG

AT5G42060.1 DEK, chromatin associated protein2.7e-0642.37Show/hide
Query:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFL
        +D + RR+I++TV  +L+ SN+ ++TE K R EA  +L +DLS    K +V++ VE+FL
Subjt:  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATTTCTCCAACCGCCGTCGAAAGCCAAAGCGAACGGAGTTCTCTACAAATTACAGCACTTCCAATCGGAGACGGCCGGTTTCATTTTTCCAGCCGACTGAACTTCACCA
AGAAACGGCGGGAACAGTTTTCCATTTCTCTTTCAACTCCGGTATTTTCTTGTTTTCAAGAAACATGGACAATGAAACCCGACGGAGAATCGAGGAAACGGTGATTGACT
TATTGAAGATATCGAACATGGAAGAGATGACGGAGTACAAAATTCGAGCCGAGGCCGAAAAACGGCTCGGAATGGATCTCTCCGATATTCAATGCAAGTGCCTGGTGAGG
GACGTGGTCGAGGACTTTTTACATTCATTTACGGAACGTGATGATAAGGGAAAAGAGGGAGAACCAGGGCCTAGTGATCGTTACGAGAATAAAGCGACGGAGCAGGAGAT
AGTCCGGAAGAAGGAGATTAACGCTGATGTTGACCGTGTGATTTGCCAGCTATCTAATAACAGGAATGTGACAGTTCATGAATTTAAAGGGAACGCTCTGGTATCAATTA
GGCAGTATTATGAAAAAGATGGAAAACAGCTTCCTGGTATTAAAGGTGGGCACTATGCATTGGTCTGTTCATTTCCTCTTATGGTGAATCTTCTTATTTTGCCCTGA
mRNA sequenceShow/hide mRNA sequence
AATTTCTCCAACCGCCGTCGAAAGCCAAAGCGAACGGAGTTCTCTACAAATTACAGCACTTCCAATCGGAGACGGCCGGTTTCATTTTTCCAGCCGACTGAACTTCACCA
AGAAACGGCGGGAACAGTTTTCCATTTCTCTTTCAACTCCGGTATTTTCTTGTTTTCAAGAAACATGGACAATGAAACCCGACGGAGAATCGAGGAAACGGTGATTGACT
TATTGAAGATATCGAACATGGAAGAGATGACGGAGTACAAAATTCGAGCCGAGGCCGAAAAACGGCTCGGAATGGATCTCTCCGATATTCAATGCAAGTGCCTGGTGAGG
GACGTGGTCGAGGACTTTTTACATTCATTTACGGAACGTGATGATAAGGGAAAAGAGGGAGAACCAGGGCCTAGTGATCGTTACGAGAATAAAGCGACGGAGCAGGAGAT
AGTCCGGAAGAAGGAGATTAACGCTGATGTTGACCGTGTGATTTGCCAGCTATCTAATAACAGGAATGTGACAGTTCATGAATTTAAAGGGAACGCTCTGGTATCAATTA
GGCAGTATTATGAAAAAGATGGAAAACAGCTTCCTGGTATTAAAGGTGGGCACTATGCATTGGTCTGTTCATTTCCTCTTATGGTGAATCTTCTTATTTTGCCCTGA
Protein sequenceShow/hide protein sequence
NFSNRRRKPKRTEFSTNYSTSNRRRPVSFFQPTELHQETAGTVFHFSFNSGIFLFSRNMDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVR
DVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKGGHYALVCSFPLMVNLLILP