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Carg20928 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20928
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionC2H2-type domain-containing protein
Genome locationCarg_Chr20:11395156..11395566
RNA-Seq ExpressionCarg20928
SyntenyCarg20928
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651931.1 hypothetical protein Csa_006531, partial [Cucumis sativus]6.1e-2256.36Show/hide
Query:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRK
        MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGCSFD++ SL SHHCK  NK+E+EAME E    LG++KS RK
Subjt:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRK

Query:  RTRKGIPTRA
        ++RKG+P RA
Subjt:  RTRKGIPTRA

KAG6571418.1 hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia]7.4e-5299.07Show/hide
Query:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI
        MD+KSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI
Subjt:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI

Query:  PTRAPFS
        PTRAPFS
Subjt:  PTRAPFS

KAG7011182.1 hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-52100Show/hide
Query:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI
        MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI
Subjt:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI

Query:  PTRAPFS
        PTRAPFS
Subjt:  PTRAPFS

XP_022928048.1 uncharacterized protein LOC111434950 [Cucurbita moschata]2.0e-4996.23Show/hide
Query:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI
        MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCK+NNKSE+EA ENEVEE LGKDKSLRKRTRKGI
Subjt:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI

Query:  PTRAPF
        PTRAPF
Subjt:  PTRAPF

XP_023511836.1 uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo]4.8e-5198.11Show/hide
Query:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI
        MD+KSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEV+EGLGKDKSLRKRTRKGI
Subjt:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI

Query:  PTRAPF
        PTRAPF
Subjt:  PTRAPF

TrEMBL top hitse value%identityAlignment
A0A0A0LQ06 C2H2-type domain-containing protein7.0e-2457.14Show/hide
Query:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRK
        MD+KS+PYNLRLRKDHK+S+ TE SK  K  +R+FQEK  ++ + +      Y C+KCGCSFD++ SL SHHCK  NK+E+EAME E    LG++KS RK
Subjt:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSL------YGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRK

Query:  RTRKGIPTRAPF
        ++RKG+P RAPF
Subjt:  RTRKGIPTRAPF

A0A6J1D739 uncharacterized protein LOC1110179595.6e-2156.36Show/hide
Query:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEV-----EEGLGKDKSLRKR
        MD+KS+PYNLRLR   KASA TE SK  ++ ER+FQEKG EE+     C+KCGC F ++ SL SHHCK  NK  +E MEN+V     ++     KS RKR
Subjt:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEV-----EEGLGKDKSLRKR

Query:  TRKGIPTRAP
        +RKGIPTRAP
Subjt:  TRKGIPTRAP

A0A6J1EMR9 uncharacterized protein LOC1114349509.8e-5096.23Show/hide
Query:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI
        MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCK+NNKSE+EA ENEVEE LGKDKSLRKRTRKGI
Subjt:  MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGI

Query:  PTRAPF
        PTRAPF
Subjt:  PTRAPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAGAAGTCGGTTCCTTATAATCTCCGACTGCGGAAGGATCACAAGGCGTCGGCTGCAACGGAGGGTTCGAAAGGTCAAAAGCAAGCAGAAAGGGAGTTTCAGGA
AAAGGGAGGCGAAGAAGTATTATCATTATATGGATGTGACAAATGTGGATGCTCTTTTGATCTTCAACCCTCTCTTCGTTCCCACCATTGCAAAAACAATAACAAAAGTG
AGAAAGAGGCAATGGAAAATGAAGTGGAGGAAGGGTTGGGGAAGGACAAATCTCTCAGAAAAAGAACCAGGAAGGGAATACCCACACGGGCTCCTTTCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGAGAAGTCGGTTCCTTATAATCTCCGACTGCGGAAGGATCACAAGGCGTCGGCTGCAACGGAGGGTTCGAAAGGTCAAAAGCAAGCAGAAAGGGAGTTTCAGGA
AAAGGGAGGCGAAGAAGTATTATCATTATATGGATGTGACAAATGTGGATGCTCTTTTGATCTTCAACCCTCTCTTCGTTCCCACCATTGCAAAAACAATAACAAAAGTG
AGAAAGAGGCAATGGAAAATGAAGTGGAGGAAGGGTTGGGGAAGGACAAATCTCTCAGAAAAAGAACCAGGAAGGGAATACCCACACGGGCTCCTTTCTCCTAGATTACT
ATTATTTTTTTT
Protein sequenceShow/hide protein sequence
MDEKSVPYNLRLRKDHKASAATEGSKGQKQAEREFQEKGGEEVLSLYGCDKCGCSFDLQPSLRSHHCKNNNKSEKEAMENEVEEGLGKDKSLRKRTRKGIPTRAPFS