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Carg20938 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20938
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionzinc finger CCCH domain-containing protein 62-like
Genome locationCarg_Chr20:11302218..11304359
RNA-Seq ExpressionCarg20938
SyntenyCarg20938
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571408.1 Zinc finger CCCH domain-containing protein 62, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6169.61Show/hide
Query:  MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPK-------------------------------------------
        MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRF K                                           
Subjt:  MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPK-------------------------------------------

Query:  -----------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
                         GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
Subjt:  -----------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT

Query:  FRRV
        FRR+
Subjt:  FRRV

KAG7011172.1 Zinc finger CCCH domain-containing protein 62, partial [Cucurbita argyrosperma subsp. argyrosperma]7.3e-74100Show/hide
Query:  MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPKGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESY
        MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPKGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESY
Subjt:  MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPKGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESY

Query:  GASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRVSSLRT
        GASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRVSSLRT
Subjt:  GASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRVSSLRT

XP_022927980.1 zinc finger CCCH domain-containing protein 62-like [Cucurbita moschata]9.3e-6169.12Show/hide
Query:  MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPK-------------------------------------------
        MPERGSKRRVIYLSSSSEEDEEESDDEEGE EEEFDNECSDNDCDELLSQRVIRF K                                           
Subjt:  MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPK-------------------------------------------

Query:  -----------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
                         GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
Subjt:  -----------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT

Query:  FRRV
        FRR+
Subjt:  FRRV

XP_022971662.1 zinc finger CCCH domain-containing protein 62 isoform X1 [Cucurbita maxima]3.7e-5764.45Show/hide
Query:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK------------------------------------
        MPERGSKRRV+YL SSSE+DEEES       DD+EGESE+EFDNECSDNDCDE+LSQRVIRF K                                    
Subjt:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK------------------------------------

Query:  ------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
                                GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
Subjt:  ------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR

Query:  NLYKLRTFRRV
        NLYKLRTFRR+
Subjt:  NLYKLRTFRRV

XP_022971663.1 zinc finger CCCH domain-containing protein 62 isoform X2 [Cucurbita maxima]1.6e-5764.93Show/hide
Query:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK------------------------------------
        MPERGSKRRV+YL SSSE+DEEES       DD+EGESE+EFDNECSDNDCDE+LSQRVIRF K                                    
Subjt:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK------------------------------------

Query:  ------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
                                GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
Subjt:  ------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR

Query:  NLYKLRTFRRV
        NLYKLRTFRRV
Subjt:  NLYKLRTFRRV

TrEMBL top hitse value%identityAlignment
A0A0A0LQ19 SAP domain-containing protein7.0e-4656.25Show/hide
Query:  MPERGSKRRVIYL--SSSSEEDEEES--------------------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK---------------------
        M +RGSKR VI +  SSSS+ DEEES                    DD+EGES EEFDNE SDN CDE+LS+RVIRF K                     
Subjt:  MPERGSKRRVIYL--SSSSEEDEEES--------------------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK---------------------

Query:  ---------------------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRG
                                               GDVCRGDTVLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRG
Subjt:  ---------------------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRG

Query:  VRKLPPLYPLLVKGRNLYKLRTFR
        VRKL PLYPLLVKGRNLYKLRTFR
Subjt:  VRKLPPLYPLLVKGRNLYKLRTFR

A0A6J1E0C9 zinc finger CCCH domain-containing protein 628.2e-4753.6Show/hide
Query:  MPERGSKRRVIYLSSSSEEDE------------------EESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPK-------------------------
        M +RG+KR  I +SSSS++D+                  +E DD+EGESEEE+DNE SD+DCD++LS+RVIRF K                         
Subjt:  MPERGSKRRVIYLSSSSEEDE------------------EESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPK-------------------------

Query:  -----------------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKL
                                           GDVCRGD VLFTQKVYAKFDKVTR GGLIGKRTVAGRVVKESYGA+KQQHTFTVEVLWSRGVRKL
Subjt:  -----------------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKL

Query:  PPLYPLLVKGRNLYKLRTFRRV
        PPLYPLLVKGRNLYKLRTFR++
Subjt:  PPLYPLLVKGRNLYKLRTFRRV

A0A6J1EQD5 zinc finger CCCH domain-containing protein 62-like4.5e-6169.12Show/hide
Query:  MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPK-------------------------------------------
        MPERGSKRRVIYLSSSSEEDEEESDDEEGE EEEFDNECSDNDCDELLSQRVIRF K                                           
Subjt:  MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPK-------------------------------------------

Query:  -----------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
                         GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT
Subjt:  -----------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRT

Query:  FRRV
        FRR+
Subjt:  FRRV

A0A6J1I2K8 zinc finger CCCH domain-containing protein 62 isoform X11.8e-5764.45Show/hide
Query:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK------------------------------------
        MPERGSKRRV+YL SSSE+DEEES       DD+EGESE+EFDNECSDNDCDE+LSQRVIRF K                                    
Subjt:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK------------------------------------

Query:  ------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
                                GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
Subjt:  ------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR

Query:  NLYKLRTFRRV
        NLYKLRTFRR+
Subjt:  NLYKLRTFRRV

A0A6J1I7J0 zinc finger CCCH domain-containing protein 62 isoform X27.9e-5864.93Show/hide
Query:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK------------------------------------
        MPERGSKRRV+YL SSSE+DEEES       DD+EGESE+EFDNECSDNDCDE+LSQRVIRF K                                    
Subjt:  MPERGSKRRVIYLSSSSEEDEEES-------DDEEGESEEEFDNECSDNDCDELLSQRVIRFPK------------------------------------

Query:  ------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
                                GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR
Subjt:  ------------------------GDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGR

Query:  NLYKLRTFRRV
        NLYKLRTFRRV
Subjt:  NLYKLRTFRRV

SwissProt top hitse value%identityAlignment
Q338N2 Zinc finger CCCH domain-containing protein 627.2e-2457.3Show/hide
Query:  KGDVCRGDTVLFTQKVYAKFDKVTR--RGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRR
        +GD C+GD V+F Q +Y +     R  +G L G+RT AGR++KESYG  KQQHTFT+E+LWSRG +  PPL+PLL+KGRNLYK +T R+
Subjt:  KGDVCRGDTVLFTQKVYAKFDKVTR--RGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRR

Arabidopsis top hitse value%identityAlignment
AT5G66840.1 SAP domain-containing protein1.5e-3270.11Show/hide
Query:  KGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRR
        KGDVC+GD VLFTQKV+ K++K+ + G ++G+RTVAG+VVKESYG +KQQHTFT+EVLW  G +KLPPLYPLLVKGRNLY+L T R+
Subjt:  KGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFTVEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATCGGAAGAGGAGTTTGATAA
TGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCCTAAAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATG
CAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACT
GTTGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGGTAAGTTCTCT
ACGTACATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGAAAGGGGTAGCAAACGAAGAGTTATTTATCTCTCCTCGTCGTCGGAGGAGGACGAAGAGGAATCAGACGATGAGGAAGGGGAATCGGAAGAGGAGTTTGATAA
TGAATGCAGCGACAACGATTGTGATGAACTTCTCTCCCAGCGAGTCATCCGCTTTCCTAAAGGTGATGTTTGTAGGGGAGATACTGTTTTGTTCACTCAGAAAGTTTATG
CAAAGTTTGATAAAGTAACTAGGCGTGGAGGGCTTATAGGGAAGAGAACTGTGGCAGGGAGGGTAGTGAAGGAAAGCTATGGTGCAAGTAAACAGCAGCATACTTTTACT
GTTGAAGTTTTATGGAGCAGGGGAGTTCGGAAGTTACCCCCACTTTATCCTCTACTTGTTAAGGGTCGAAATCTCTATAAACTAAGAACATTCAGACGGGTAAGTTCTCT
ACGTACATAA
Protein sequenceShow/hide protein sequence
MPERGSKRRVIYLSSSSEEDEEESDDEEGESEEEFDNECSDNDCDELLSQRVIRFPKGDVCRGDTVLFTQKVYAKFDKVTRRGGLIGKRTVAGRVVKESYGASKQQHTFT
VEVLWSRGVRKLPPLYPLLVKGRNLYKLRTFRRVSSLRT