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Carg20939 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20939
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RALF-like 34
Genome locationCarg_Chr20:11300480..11300845
RNA-Seq ExpressionCarg20939
SyntenyCarg20939
Gene Ontology termsGO:0019722 - calcium-mediated signaling (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR008801 - Rapid ALkalinization Factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571407.1 Protein RALF-like 34, partial [Cucurbita argyrosperma subsp. sororia]1.8e-6299.18Show/hide
Query:  MASKLLFPFFTI-LLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC
        MASKLLFPFFTI LLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC
Subjt:  MASKLLFPFFTI-LLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC

Query:  YKARGPVNPYSRGCSAITRCRR
        YKARGPVNPYSRGCSAITRCRR
Subjt:  YKARGPVNPYSRGCSAITRCRR

XP_004148071.1 protein RALF-like 34 [Cucumis sativus]9.6e-4881.6Show/hide
Query:  MASK-LLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISI---PDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYT
        MASK LLFP FT+LLL LS++SAHL VDTSLKLMADALEWPTT S+   P  D   D  DL QDPRRSLFW RVHYYISYGAL+ANRIPCPPRSGRPYYT
Subjt:  MASK-LLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISI---PDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYT

Query:  HNCYKARGPVNPYSRGCSAITRCRR
        HNCYKARGPVNPY+RGCSAITRCRR
Subjt:  HNCYKARGPVNPYSRGCSAITRCRR

XP_008457868.1 PREDICTED: protein RALF-like 34 [Cucumis melo]3.6e-4781.6Show/hide
Query:  MASK-LLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHD---DLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYT
        MASK LLF  FT+LLL LS++SAHL VDTSLKLMADALEWPTT S+     D D D   DL QDPRRSLFW RVHYYISYGAL+ANRIPCPPRSGRPYYT
Subjt:  MASK-LLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHD---DLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYT

Query:  HNCYKARGPVNPYSRGCSAITRCRR
        HNCYKARGPVNPYSRGCSAITRCRR
Subjt:  HNCYKARGPVNPYSRGCSAITRCRR

XP_022928024.1 protein RALF-like 34 [Cucurbita moschata]6.8e-6295.28Show/hide
Query:  MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDL------DHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPY
        MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDL      DHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPY
Subjt:  MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDL------DHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPY

Query:  YTHNCYKARGPVNPYSRGCSAITRCRR
        YTHNCYKARGPVNPYSRGCSAITRCRR
Subjt:  YTHNCYKARGPVNPYSRGCSAITRCRR

XP_023513191.1 protein RALF-like 34 [Cucurbita pepo subsp. pepo]7.3e-64100Show/hide
Query:  MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNCY
        MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNCY
Subjt:  MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNCY

Query:  KARGPVNPYSRGCSAITRCRR
        KARGPVNPYSRGCSAITRCRR
Subjt:  KARGPVNPYSRGCSAITRCRR

TrEMBL top hitse value%identityAlignment
A0A0A0LMS2 Uncharacterized protein4.6e-4881.6Show/hide
Query:  MASK-LLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISI---PDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYT
        MASK LLFP FT+LLL LS++SAHL VDTSLKLMADALEWPTT S+   P  D   D  DL QDPRRSLFW RVHYYISYGAL+ANRIPCPPRSGRPYYT
Subjt:  MASK-LLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISI---PDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYT

Query:  HNCYKARGPVNPYSRGCSAITRCRR
        HNCYKARGPVNPY+RGCSAITRCRR
Subjt:  HNCYKARGPVNPYSRGCSAITRCRR

A0A1S3C7S7 protein RALF-like 341.8e-4781.6Show/hide
Query:  MASK-LLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHD---DLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYT
        MASK LLF  FT+LLL LS++SAHL VDTSLKLMADALEWPTT S+     D D D   DL QDPRRSLFW RVHYYISYGAL+ANRIPCPPRSGRPYYT
Subjt:  MASK-LLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHD---DLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYT

Query:  HNCYKARGPVNPYSRGCSAITRCRR
        HNCYKARGPVNPYSRGCSAITRCRR
Subjt:  HNCYKARGPVNPYSRGCSAITRCRR

A0A1S3VP27 protein RALF-like 342.5e-3363.78Show/hide
Query:  MASKLLFPFFTILLLLLSAASAHLPV-----DTSLKLMADALEWPTTISI-PDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPY
        MAS L  P  T+ L L    + H  V     DT L LM+DAL+WPTT+S+  DLD D + D      RRSLFW R+ YYISYGAL+ANRIPCPPRSGR Y
Subjt:  MASKLLFPFFTILLLLLSAASAHLPV-----DTSLKLMADALEWPTTISI-PDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPY

Query:  YTHNCYKARGPVNPYSRGCSAITRCRR
        YTHNCYKARGPV+PYSRGCS ITRCRR
Subjt:  YTHNCYKARGPVNPYSRGCSAITRCRR

A0A6J1EJN3 protein RALF-like 343.3e-6295.28Show/hide
Query:  MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDL------DHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPY
        MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDL      DHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPY
Subjt:  MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDL------DHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPY

Query:  YTHNCYKARGPVNPYSRGCSAITRCRR
        YTHNCYKARGPVNPYSRGCSAITRCRR
Subjt:  YTHNCYKARGPVNPYSRGCSAITRCRR

A0A6P4A840 protein RALF-like 345.5e-3367.83Show/hide
Query:  FTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHDDLHQD---PRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNCYKARGPV
        F ILL L S + A L  DTSLKLM+DALEWPTT+S  D   + D ++   D    RRSLFW R+ YYISYGAL+ANRIPCPPRSGR YYTHNC+KARGPV
Subjt:  FTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHDDLHQD---PRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNCYKARGPV

Query:  NPYSRGCSAITRCRR
        +PY+RGCS ITRCRR
Subjt:  NPYSRGCSAITRCRR

SwissProt top hitse value%identityAlignment
Q8L9P8 Protein RALF-like 334.5e-0863.27Show/hide
Query:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR
        YISYGAL  N +PC  R G  YY  NC +     NPYSRGCSAITRCRR
Subjt:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR

Q945T0 Rapid alkalinization factor1.0e-0764.58Show/hide
Query:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCR
        YISYGAL  N +PC  R G  YY  NC K     NPYSRGCSAITRCR
Subjt:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCR

Q9FHA6 Protein RALF-like 344.3e-2750.82Show/hide
Query:  LFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTIS--IPDLDHDHDHDDLHQD----PRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC
        L    ++L  +    S  L  + SL L+ D  +WP + S     +D +   +   +D     RRSL+W R  YYISYGAL+ANR+PCPPRSGR YYTHNC
Subjt:  LFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTIS--IPDLDHDHDHDDLHQD----PRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC

Query:  YKARGPVNPYSRGCSAITRCRR
        ++ARGPV+PYSRGCS+ITRCRR
Subjt:  YKARGPVNPYSRGCSAITRCRR

Q9LUS7 Rapid alkalinization factor 233.5e-0865.31Show/hide
Query:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR
        YISYGAL  N IPC  R G  YY  NC +     NPYSRGCSAITRCRR
Subjt:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR

Q9MA62 Protein RALF-like 222.5e-0633.61Show/hide
Query:  SKLLFPFFTILLLLLSAASAHLPVDTSLKLM---ADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC
        ++ ++    IL +++SA  +      SL  +   + +L    T SI +   + +  +   D  R +   +   YISYGA+  N +PC  R G  YY  NC
Subjt:  SKLLFPFFTILLLLLSAASAHLPVDTSLKLM---ADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC

Query:  YKARGPVNPYSRGCSAITRCRR
         +     NPYSRGCS ITRCRR
Subjt:  YKARGPVNPYSRGCSAITRCRR

Arabidopsis top hitse value%identityAlignment
AT2G33775.1 ralf-like 191.3e-0759.18Show/hide
Query:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR
        YISYGAL  N +PC  R GR YY  +C K R   NPY RGCS IT C R
Subjt:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR

AT3G05490.1 ralf-like 221.8e-0733.61Show/hide
Query:  SKLLFPFFTILLLLLSAASAHLPVDTSLKLM---ADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC
        ++ ++    IL +++SA  +      SL  +   + +L    T SI +   + +  +   D  R +   +   YISYGA+  N +PC  R G  YY  NC
Subjt:  SKLLFPFFTILLLLLSAASAHLPVDTSLKLM---ADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC

Query:  YKARGPVNPYSRGCSAITRCRR
         +     NPYSRGCS ITRCRR
Subjt:  YKARGPVNPYSRGCSAITRCRR

AT3G16570.1 rapid alkalinization factor 232.5e-0965.31Show/hide
Query:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR
        YISYGAL  N IPC  R G  YY  NC +     NPYSRGCSAITRCRR
Subjt:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR

AT4G15800.1 ralf-like 333.2e-0963.27Show/hide
Query:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR
        YISYGAL  N +PC  R G  YY  NC +     NPYSRGCSAITRCRR
Subjt:  YISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYSRGCSAITRCRR

AT5G67070.1 ralf-like 343.1e-2850.82Show/hide
Query:  LFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTIS--IPDLDHDHDHDDLHQD----PRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC
        L    ++L  +    S  L  + SL L+ D  +WP + S     +D +   +   +D     RRSL+W R  YYISYGAL+ANR+PCPPRSGR YYTHNC
Subjt:  LFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTIS--IPDLDHDHDHDDLHQD----PRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNC

Query:  YKARGPVNPYSRGCSAITRCRR
        ++ARGPV+PYSRGCS+ITRCRR
Subjt:  YKARGPVNPYSRGCSAITRCRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCAAGCTCCTCTTCCCCTTCTTCACCATCCTCCTCCTCCTCCTCTCCGCCGCTTCCGCCCATCTCCCCGTCGACACCTCTCTCAAGCTCATGGCCGACGCCCT
CGAATGGCCCACCACAATCTCCATTCCCGACCTCGACCACGACCACGACCACGACGACCTTCACCAAGACCCGCGCAGATCTCTCTTCTGGAGCCGAGTCCACTACTACA
TCTCCTACGGCGCTCTCGCCGCCAACCGGATCCCTTGCCCGCCTCGTTCCGGCCGCCCTTACTACACTCACAACTGCTACAAGGCTCGCGGCCCTGTCAATCCCTACAGC
CGTGGATGCTCCGCCATCACCCGCTGCCGCCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCAAGCTCCTCTTCCCCTTCTTCACCATCCTCCTCCTCCTCCTCTCCGCCGCTTCCGCCCATCTCCCCGTCGACACCTCTCTCAAGCTCATGGCCGACGCCCT
CGAATGGCCCACCACAATCTCCATTCCCGACCTCGACCACGACCACGACCACGACGACCTTCACCAAGACCCGCGCAGATCTCTCTTCTGGAGCCGAGTCCACTACTACA
TCTCCTACGGCGCTCTCGCCGCCAACCGGATCCCTTGCCCGCCTCGTTCCGGCCGCCCTTACTACACTCACAACTGCTACAAGGCTCGCGGCCCTGTCAATCCCTACAGC
CGTGGATGCTCCGCCATCACCCGCTGCCGCCGCTGA
Protein sequenceShow/hide protein sequence
MASKLLFPFFTILLLLLSAASAHLPVDTSLKLMADALEWPTTISIPDLDHDHDHDDLHQDPRRSLFWSRVHYYISYGALAANRIPCPPRSGRPYYTHNCYKARGPVNPYS
RGCSAITRCRR