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Carg20964 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg20964
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionarabinogalactan peptide 20-like
Genome locationCarg_Chr14:14526738..14527437
RNA-Seq ExpressionCarg20964
SyntenyCarg20964
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147463.1 arabinogalactan peptide 20-like [Momordica charantia]5.1e-2988.89Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASS STSRAFS LFT F LI FI+SPLVDAHSS PAPAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]1.7e-3297.59Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV--PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV  PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV--PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_022979386.1 arabinogalactan peptide 20-like [Cucurbita maxima]1.2e-3093.98Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV--PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNST RAFSGLFTFFTLILFILSPL+DAHSSV  PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASS NFFLN
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV--PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]5.3e-34100Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]9.6e-2888.89Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        M SSNSTSRAFSGLFTFF LI FILSPLVDA    PAPAPAPASDGTSIDQG+AYVLMLVALVLTYLIHPLDASSY+FFLN
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

TrEMBL top hitse value%identityAlignment
A0A0A0L7A0 Uncharacterized protein3.3e-2683.95Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        M S NSTSRAF  LFTFF+LI FILSPLVDA    PAPAPAP+SDGTSIDQG+AYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1D1D7 arabinogalactan peptide 20-like2.5e-2988.89Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASS STSRAFS LFT F LI FI+SPLVDAHSS PAPAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1E8M6 arabinogalactan peptide 16-like8.2e-3397.59Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV--PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV  PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV--PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1IAU1 arabinogalactan peptide 16-like3.7e-2581.25Show/hide
Query:  ASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        +SS+ST  AFSG FT F LI FIL PLV AHSS  APAPAPASDGTSIDQG+AYVLML+ALVLTYLIHPLDASSY FFLN
Subjt:  ASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

A0A6J1IQM6 arabinogalactan peptide 20-like5.9e-3193.98Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV--PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN
        MASSNST RAFSGLFTFFTLILFILSPL+DAHSSV  PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASS NFFLN
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSV--PAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.7e-1460Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS +      F  F+ +  ++  L  A S   APAPAP SDGTSIDQG+AY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDA-SSYNFF

Q8L9T8 Arabinogalactan protein 417.0e-1365.62Show/hide
Query:  STSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH
        S SR F G+ T  ++I  IL P+  AH+   APAPAP SDGT+IDQG+AYVLMLVALVLTYLIH
Subjt:  STSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH

Q9FK16 Arabinogalactan protein 221.1e-1062.5Show/hide
Query:  LFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH
        +   F +I  IL P+  +HSS  +PAPAP SDGTSIDQG+AYVLM+VAL LTY IH
Subjt:  LFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH

Q9M373 Arabinogalactan protein 202.2e-1458.02Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS +     +   F  +  ++SP   A S   APAP+P SDGTSIDQG+AY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDA--SSYNFF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.2e-1560Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDA-SSYNFF
        MAS NS +      F  F+ +  ++  L  A S   APAPAP SDGTSIDQG+AY+LM+VALVLTYLIHPLDA SSY+FF
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDA-SSYNFF

AT3G61640.1 arabinogalactan protein 201.5e-1558.02Show/hide
Query:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDA--SSYNFF
        MAS NS +     +   F  +  ++SP   A S   APAP+P SDGTSIDQG+AY+LM+VALVLTYLIHPLDA  SSY FF
Subjt:  MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDA--SSYNFF

AT5G24105.1 arabinogalactan protein 414.9e-1465.62Show/hide
Query:  STSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH
        S SR F G+ T  ++I  IL P+  AH+   APAPAP SDGT+IDQG+AYVLMLVALVLTYLIH
Subjt:  STSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH

AT5G53250.1 arabinogalactan protein 227.9e-1262.5Show/hide
Query:  LFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH
        +   F +I  IL P+  +HSS  +PAPAP SDGTSIDQG+AYVLM+VAL LTY IH
Subjt:  LFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCTAATTCTACTTCTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCGTTGACGCCCACTCTTCGGTCCCTGC
TCCCGCTCCCGCTCCCGCTAGCGATGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCAT
CTTCCTACAACTTTTTTCTCAATTGA
mRNA sequenceShow/hide mRNA sequence
ACTACTCTTCTCCTTCTCTTTCTTCGTTCTTCTTCATCATTTGATCCGAGGTTCCAGAGATTTGGTTGTTCCGAGAGGGAGACCATCCATGGCGTCCTCTAATTCTACTT
CTAGGGCTTTCTCCGGCCTCTTCACCTTCTTCACTCTCATCCTCTTCATTCTATCGCCACTCGTTGACGCCCACTCTTCGGTCCCTGCTCCCGCTCCCGCTCCCGCTAGC
GATGGGACCTCCATAGACCAGGGCGTTGCGTACGTGTTGATGCTGGTGGCGTTGGTTCTCACATACCTAATTCACCCGCTCGATGCATCTTCCTACAACTTTTTTCTCAA
TTGAATTCTAGGATTGTAGCAATGTAGGCGCTGTTTGTGGACGTTTTGAGAAGGAACGAGGCCCAACTTTCTATCTCGTTGTCATAAATGTAGGTTTCAGAGGAACATGT
TCATATTGGGTTTCGCAGATTTTGATCCATTGGTCTAATTATTCATTTGTTTATTCCATTACCTTTCTCTCTTCTTTTATCATGATTTATACACTGGATCCATTTTACAG
AGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAG
Protein sequenceShow/hide protein sequence
MASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPASDGTSIDQGVAYVLMLVALVLTYLIHPLDASSYNFFLN