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Carg21013 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21013
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPre-mRNA cleavage factor Im 25 kDa subunit
Genome locationCarg_Chr14:14256246..14257958
RNA-Seq ExpressionCarg21013
SyntenyCarg21013
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR016706 - Cleavage/polyadenylation specificity factor subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018993.1 Pre-mRNA cleavage factor Im 25 kDa subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-64100Show/hide
Query:  MFVLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
        MFVLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY
Subjt:  MFVLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRY

Query:  GPVISTIPQQLSRFQFNMITT
        GPVISTIPQQLSRFQFNMITT
Subjt:  GPVISTIPQQLSRFQFNMITT

XP_004133873.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus]3.2e-5997.37Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        EIEGLKRKLTSKLGANSP+LQPDWQIGECVA WWRPNFETVMYPYCPPHITK KECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRFQFNMITT
Subjt:  PQQLSRFQFNMITT

XP_011048707.1 PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 2 [Populus euphratica]9.2e-5995.61Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        EIEGLKRKLTSKLGANSPAL PDWQIGECVATWWRPNFET+MYPYCPPHITK KECKKL++VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRFQFNMITT
Subjt:  PQQLSRFQFNMITT

XP_022147484.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia]1.4e-5998.25Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        EIEGLKRKLTSKLGANSPALQPDWQIGECVA WWRPNFETVMYPYCPPHITK KECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRFQFNMITT
Subjt:  PQQLSRFQFNMITT

XP_022924789.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita moschata]7.6e-61100Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRFQFNMITT
Subjt:  PQQLSRFQFNMITT

TrEMBL top hitse value%identityAlignment
A0A6J1D153 Pre-mRNA cleavage factor Im 25 kDa subunit6.9e-6098.25Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        EIEGLKRKLTSKLGANSPALQPDWQIGECVA WWRPNFETVMYPYCPPHITK KECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRFQFNMITT
Subjt:  PQQLSRFQFNMITT

A0A6J1EA71 Pre-mRNA cleavage factor Im 25 kDa subunit3.7e-61100Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRFQFNMITT
Subjt:  PQQLSRFQFNMITT

A0A6J1GGL6 Pre-mRNA cleavage factor Im 25 kDa subunit6.9e-6098.25Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        EIEGLKRKLTSKLGANSPALQPDWQIGECVA WWRPNFETVMYPYCPPHITK KECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRFQFNMITT
Subjt:  PQQLSRFQFNMITT

A0A6J1IEE3 Pre-mRNA cleavage factor Im 25 kDa subunit6.9e-6098.25Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        EIEGLKRKLTSKLGANSPALQPDWQIGECVA WWRPNFETVMYPYCPPHITK KECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRFQFNMITT
Subjt:  PQQLSRFQFNMITT

A0A6J1IW86 Pre-mRNA cleavage factor Im 25 kDa subunit3.7e-61100Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRFQFNMITT
Subjt:  PQQLSRFQFNMITT

SwissProt top hitse value%identityAlignment
O43809 Cleavage and polyadenylation specificity factor subunit 51.6e-3462.39Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITK KE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQF
        PQ LSRF F
Subjt:  PQQLSRFQF

Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 51.6e-3462.39Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITK KE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQF
        PQ LSRF F
Subjt:  PQQLSRFQF

Q5RAI8 Cleavage and polyadenylation specificity factor subunit 51.6e-3462.39Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITK KE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQF
        PQ LSRF F
Subjt:  PQQLSRFQF

Q8GXS3 Pre-mRNA cleavage factor Im 25 kDa subunit 22.6e-5686.84Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        E +GLKRKLTSKLG NS AL PDW +GECVATWWRPNFET+MYPYCPPHITK KECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRF FNMI++
Subjt:  PQQLSRFQFNMITT

Q9CQF3 Cleavage and polyadenylation specificity factor subunit 51.6e-3462.39Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        E+EGLKR +T  LG     LQ DW I +C+  WWRPNFE   YPY P HITK KE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQF
        PQ LSRF F
Subjt:  PQQLSRFQF

Arabidopsis top hitse value%identityAlignment
AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit1.9e-5786.84Show/hide
Query:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
        E +GLKRKLTSKLG NS AL PDW +GECVATWWRPNFET+MYPYCPPHITK KECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI
Subjt:  EIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI

Query:  PQQLSRFQFNMITT
        PQQLSRF FNMI++
Subjt:  PQQLSRFQFNMITT

AT4G29820.1 homolog of CFIM-257.6e-3555.75Show/hide
Query:  AEIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVIST
        ++IEGLKRKL SKL  N       +++GEC+  WWRPNFET+MYP+ PP+I   KEC KLF+V L   + F VPKN KLLAVPL +L++N + YGP++S 
Subjt:  AEIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVIST

Query:  IPQQLSRFQFNMI
        IP+ LS+F FNM+
Subjt:  IPQQLSRFQFNMI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTCTTAACATCTGCAGAAATTGAAGGTTTAAAGAGGAAGCTGACGAGCAAACTGGGTGCAAATTCACCCGCTCTCCAGCCTGATTGGCAGATTGGTGAATGTGT
GGCTACTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTACTGCCCCCCTCATATTACTAAAGCCAAGGAATGCAAAAAGCTCTTCATTGTTCACTTGTCTGAAA
GGGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTACGACAACGTGCAGAGATACGGACCTGTTATATCGACGATCCCACAGCAG
CTTTCCAGGTTCCAGTTCAACATGATCACCACATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTCTTAACATCTGCAGAAATTGAAGGTTTAAAGAGGAAGCTGACGAGCAAACTGGGTGCAAATTCACCCGCTCTCCAGCCTGATTGGCAGATTGGTGAATGTGT
GGCTACTTGGTGGAGACCAAACTTTGAAACTGTTATGTATCCTTACTGCCCCCCTCATATTACTAAAGCCAAGGAATGCAAAAAGCTCTTCATTGTTCACTTGTCTGAAA
GGGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTGCTTGCAGTTCCTTTGTTTGAGCTCTACGACAACGTGCAGAGATACGGACCTGTTATATCGACGATCCCACAGCAG
CTTTCCAGGTTCCAGTTCAACATGATCACCACATGA
Protein sequenceShow/hide protein sequence
MFVLTSAEIEGLKRKLTSKLGANSPALQPDWQIGECVATWWRPNFETVMYPYCPPHITKAKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQ
LSRFQFNMITT