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Carg21027 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21027
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionZinc finger, C3HC4 type family protein
Genome locationCarg_Chr13:1056083..1057698
RNA-Seq ExpressionCarg21027
SyntenyCarg21027
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583307.1 General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia]1.9e-49100Show/hide
Query:  KPSLFLFRRKFSREAYVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSR
        KPSLFLFRRKFSREAYVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSR
Subjt:  KPSLFLFRRKFSREAYVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSR

Query:  GW
        GW
Subjt:  GW

KAG7019216.1 hypothetical protein SDJN02_18174, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-49100Show/hide
Query:  KPSLFLFRRKFSREAYVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSR
        KPSLFLFRRKFSREAYVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSR
Subjt:  KPSLFLFRRKFSREAYVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSR

Query:  GW
        GW
Subjt:  GW

XP_022964845.1 uncharacterized protein LOC111464826 [Cucurbita moschata]6.9e-39100Show/hide
Query:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
        MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW

XP_022970477.1 uncharacterized protein LOC111469446 [Cucurbita maxima]4.4e-3897.62Show/hide
Query:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
        MISILAQERLLGAALGSVFAGVVVFEQRKS+Y+SISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW

XP_023519919.1 uncharacterized protein LOC111783242 [Cucurbita pepo subsp. pepo]5.8e-3897.62Show/hide
Query:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
        MISILAQERLLGAALGSVFAGVVVFEQRKS+Y SISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW

TrEMBL top hitse value%identityAlignment
A0A0A0LXB2 Uncharacterized protein1.1e-3791.95Show/hide
Query:  YVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
        YVTMIS+LAQERLLG ALGSVFAGVVVFEQRKS+Y SIS+NYPP TQSPMRKPVLAKKYGPEFSHLWN AVDQTFGPVIQALSSRGW
Subjt:  YVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW

A0A1S3C5P6 uncharacterized protein LOC103497197 isoform X25.0e-3589.29Show/hide
Query:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
        MIS+LAQERLLG ALGS FAGVVVFEQRKS+Y SIS+NYPP TQSPMRKPVLAKKYGPEFSHLWN AVDQTFGP+IQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW

A0A5D3BR76 Uncharacterized protein5.0e-3589.29Show/hide
Query:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
        MIS+LAQERLLG ALGS FAGVVVFEQRKS+Y SIS+NYPP TQSPMRKPVLAKKYGPEFSHLWN AVDQTFGP+IQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW

A0A6J1HLZ5 uncharacterized protein LOC1114648263.3e-39100Show/hide
Query:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
        MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW

A0A6J1HZ79 uncharacterized protein LOC1114694462.1e-3897.62Show/hide
Query:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
        MISILAQERLLGAALGSVFAGVVVFEQRKS+Y+SISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
Subjt:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28430.1 unknown protein5.4e-1855.29Show/hide
Query:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSIS-KNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW
        MISILAQERLLG  LGS   G +VFEQRK I++S+S        Q+ +   +  KKY  EF+ LWN AVDQTF P I+ LSSR W
Subjt:  MISILAQERLLGAALGSVFAGVVVFEQRKSIYNSIS-KNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGCCCTCTTTGTTTCTCTTCCGACGGAAATTCAGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTAGGGAGCGTGTT
CGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCATATACAACTCCATTTCGAAAAACTATCCACCAACTACTCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAAT
ATGGCCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGGCCTGTGATTCAGGCTCTCAGTTCACGGGGATGGTGA
mRNA sequenceShow/hide mRNA sequence
AAGCCCTCTTTGTTTCTCTTCCGACGGAAATTCAGCCGTGAAGCTTATGTCACCATGATTTCCATTCTCGCTCAGGAGCGACTGCTTGGTGCTGCATTAGGGAGCGTGTT
CGCCGGGGTTGTTGTTTTTGAGCAACGGAAAAGCATATACAACTCCATTTCGAAAAACTATCCACCAACTACTCAATCTCCGATGAGAAAACCTGTACTAGCAAAGAAAT
ATGGCCCAGAGTTTTCGCACCTATGGAATAGCGCTGTAGACCAGACATTTGGGCCTGTGATTCAGGCTCTCAGTTCACGGGGATGGTGA
Protein sequenceShow/hide protein sequence
KPSLFLFRRKFSREAYVTMISILAQERLLGAALGSVFAGVVVFEQRKSIYNSISKNYPPTTQSPMRKPVLAKKYGPEFSHLWNSAVDQTFGPVIQALSSRGW