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Carg21062 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21062
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein indeterminate-domain 2-like
Genome locationCarg_Chr13:1361751..1364725
RNA-Seq ExpressionCarg21062
SyntenyCarg21062
Gene Ontology termsGO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR033243 - Zinc finger protein JACKDAW-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583492.1 Zinc finger protein GAI-ASSOCIATED FACTOR 1, partial [Cucurbita argyrosperma subsp. sororia]8.4e-9051.2Show/hide
Query:  FRQRVDMMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------
        FRQRVDMMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTP          P +L                                    
Subjt:  FRQRVDMMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------------FLQCF-----------------------------------PRQLPLS-PPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQ
                       F+  F                                   PRQLPLS PPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQ
Subjt:  ---------------FLQCF-----------------------------------PRQLPLS-PPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQ

Query:  QSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQV
        QSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAA TAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQV
Subjt:  QSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQV

Query:  VHLTPAGSNQCSDQSRRH
        VHLTPAGSNQ SDQSRRH
Subjt:  VHLTPAGSNQCSDQSRRH

KAG7019248.1 hypothetical protein SDJN02_18208, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-124100Show/hide
Query:  FRQRVDMMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPGKPNTLFLQCFPRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLF
        FRQRVDMMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPGKPNTLFLQCFPRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLF
Subjt:  FRQRVDMMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPGKPNTLFLQCFPRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLF

Query:  LPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLG
        LPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLG
Subjt:  LPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLG

Query:  VGNQVVHLTPAGSNQCSDQSRRH
        VGNQVVHLTPAGSNQCSDQSRRH
Subjt:  VGNQVVHLTPAGSNQCSDQSRRH

XP_022964877.1 protein indeterminate-domain 2-like [Cucurbita moschata]2.1e-8850.85Show/hide
Query:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------
        MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTP          P +L                                          
Subjt:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP
                 F+  F                                   PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP
Subjt:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP

Query:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG
        LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG
Subjt:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG

Query:  SNQCSDQSRRH
        SNQ SDQSRRH
Subjt:  SNQCSDQSRRH

XP_022970423.1 protein indeterminate-domain 2-like [Cucurbita maxima]9.9e-8349.15Show/hide
Query:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------
        MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTP          P +L                                          
Subjt:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP
                 F+  F                                   PRQLPLS PPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSE 
Subjt:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP

Query:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG
        LTTTSSYPPPPHMSATALLQKA+QMGP+RTP TPPILFNNTTAVTAYGMNNSAAPTA LSDGRPMMKPIMGGAKEEIG QNLTRDFLGVGNQVVHLTPAG
Subjt:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG

Query:  SNQCSDQSRRH
        SNQ SDQSRRH
Subjt:  SNQCSDQSRRH

XP_023519678.1 protein indeterminate-domain 2-like [Cucurbita pepo subsp. pepo]7.6e-8349.15Show/hide
Query:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------
        MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTP          P +L                                          
Subjt:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP
                 F+  F                                   PRQLPLS   PPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP
Subjt:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP

Query:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG
        LTTTSSYPPPPHMSATALLQKASQMGP+RTPPTPPILFNNTTAVTAYGMNNSAA TAV+SDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQ VHLTPAG
Subjt:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG

Query:  SNQCSDQSRRH
        SNQ SDQSRRH
Subjt:  SNQCSDQSRRH

TrEMBL top hitse value%identityAlignment
A0A0A0LSI1 C2H2-type domain-containing protein7.7e-4969.51Show/hide
Query:  PLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHP----PLFLPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVT--AY
        PLS   PPQLPLWLDPP NPN FFS A + H     P F PENQ  F SE LTT SSY   PHMSATALLQKA+QMGP+ TP   PILFN  TA T   Y
Subjt:  PLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHP----PLFLPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVT--AY

Query:  GMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAGSNQCSDQSRRH
        GM NS A    LSDGR  MKP+MGGAKEEIGG NLTRDFLGVGNQVVHLTP GSNQ  DQSRR+
Subjt:  GMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAGSNQCSDQSRRH

A0A1S3CK10 protein indeterminate-domain 27.2e-4755.8Show/hide
Query:  HHP---NPNPNPVLVPLKKKRNLPGTPGK---------PNTLFLQCFPRQL----------PLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHP----PLF
        HHP   N N +P    L  + N P +P             T     FP  +          PLS    PQLPLWLDPP N N FFS A + H     P F
Subjt:  HHP---NPNPNPVLVPLKKKRNLPGTPGK---------PNTLFLQCFPRQL----------PLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHP----PLF

Query:  LPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVT--AYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDF
         PENQ  F SEPLTT SSY   PHMSATALLQKA+QMGP+ TP   PILFN  TA T   YGM NS A  A LSDG   MKP+MGGAKEEIGGQNLTRDF
Subjt:  LPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVT--AYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDF

Query:  LGVGNQVVHLTPAGSNQCSDQSRR
        LGVGNQV+HLTP GSN+  DQSRR
Subjt:  LGVGNQVVHLTPAGSNQCSDQSRR

A0A5D3DBQ5 Protein indeterminate-domain 27.2e-4755.8Show/hide
Query:  HHP---NPNPNPVLVPLKKKRNLPGTPGK---------PNTLFLQCFPRQL----------PLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHP----PLF
        HHP   N N +P    L  + N P +P             T     FP  +          PLS    PQLPLWLDPP N N FFS A + H     P F
Subjt:  HHP---NPNPNPVLVPLKKKRNLPGTPGK---------PNTLFLQCFPRQL----------PLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHP----PLF

Query:  LPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVT--AYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDF
         PENQ  F SEPLTT SSY   PHMSATALLQKA+QMGP+ TP   PILFN  TA T   YGM NS A  A LSDG   MKP+MGGAKEEIGGQNLTRDF
Subjt:  LPENQQSFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVT--AYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDF

Query:  LGVGNQVVHLTPAGSNQCSDQSRR
        LGVGNQV+HLTP GSN+  DQSRR
Subjt:  LGVGNQVVHLTPAGSNQCSDQSRR

A0A6J1HIV9 protein indeterminate-domain 2-like1.0e-8850.85Show/hide
Query:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------
        MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTP          P +L                                          
Subjt:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP
                 F+  F                                   PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP
Subjt:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP

Query:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG
        LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG
Subjt:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG

Query:  SNQCSDQSRRH
        SNQ SDQSRRH
Subjt:  SNQCSDQSRRH

A0A6J1I3T2 protein indeterminate-domain 2-like4.8e-8349.15Show/hide
Query:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------
        MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTP          P +L                                          
Subjt:  MMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPG--------KPNTL------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP
                 F+  F                                   PRQLPLS PPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSE 
Subjt:  ---------FLQCF-----------------------------------PRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEP

Query:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG
        LTTTSSYPPPPHMSATALLQKA+QMGP+RTP TPPILFNNTTAVTAYGMNNSAAPTA LSDGRPMMKPIMGGAKEEIG QNLTRDFLGVGNQVVHLTPAG
Subjt:  LTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAG

Query:  SNQCSDQSRRH
        SNQ SDQSRRH
Subjt:  SNQCSDQSRRH

SwissProt top hitse value%identityAlignment
Q9ZUL3 Protein indeterminate-domain 5, chloroplastic5.6e-0430.66Show/hide
Query:  SFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTA---------YGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGG------
        S FS  + + +S    PHMSATALLQKA+QMG + +        NN    ++         YG N S     + S   P     + G     G       
Subjt:  SFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTA---------YGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGG------

Query:  ------QNLTRDFLGVGNQVVHLTPAGSNQCSDQSRR
              Q++TRDFLGVG  V  ++ +G  Q   Q ++
Subjt:  ------QNLTRDFLGVGNQVVHLTPAGSNQCSDQSRR

Arabidopsis top hitse value%identityAlignment
AT2G02070.1 indeterminate(ID)-domain 54.0e-0530.66Show/hide
Query:  SFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTA---------YGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGG------
        S FS  + + +S    PHMSATALLQKA+QMG + +        NN    ++         YG N S     + S   P     + G     G       
Subjt:  SFFSEPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTA---------YGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGG------

Query:  ------QNLTRDFLGVGNQVVHLTPAGSNQCSDQSRR
              Q++TRDFLGVG  V  ++ +G  Q   Q ++
Subjt:  ------QNLTRDFLGVGNQVVHLTPAGSNQCSDQSRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCCGACAAAGAGTGGATATGATGTCTGAATTTGATGCCCTTTCTGGTCTCTCCACAATCAGCAATCTTATTGGTCAACACCATCCTAATCCCAACCCTAATCCAGTACT
TGTTCCTCTTAAGAAGAAGAGGAATTTACCAGGAACTCCAGGCAAACCTAACACTCTCTTCCTCCAGTGTTTTCCCCGGCAACTGCCACTGTCGCCGCCGCCGCCGCCGC
AGCTCCCTCTCTGGCTCGACCCTCCACAAAATCCCAACCCCTTTTTCTCCACCGCCTTCTCCGACCACCCTCCATTATTCTTGCCGGAAAATCAGCAATCTTTCTTTTCC
GAGCCGCTAACGACGACCTCCTCGTACCCGCCGCCACCCCACATGTCCGCCACCGCTCTCCTCCAGAAAGCATCTCAAATGGGGCCCAGCAGAACGCCGCCCACGCCGCC
AATTCTCTTCAACAACACCACCGCCGTCACAGCATATGGAATGAACAACTCCGCCGCCCCTACCGCCGTCTTGTCGGATGGCCGTCCGATGATGAAGCCGATAATGGGTG
GCGCAAAAGAAGAAATTGGAGGGCAGAATTTAACCAGAGACTTCCTCGGCGTCGGAAATCAGGTGGTGCATCTCACGCCGGCGGGATCCAATCAATGCAGTGATCAAAGC
CGCCGCCATTAG
mRNA sequenceShow/hide mRNA sequence
TTCCGACAAAGAGTGGATATGATGTCTGAATTTGATGCCCTTTCTGGTCTCTCCACAATCAGCAATCTTATTGGTCAACACCATCCTAATCCCAACCCTAATCCAGTACT
TGTTCCTCTTAAGAAGAAGAGGAATTTACCAGGAACTCCAGGCAAACCTAACACTCTCTTCCTCCAGTGTTTTCCCCGGCAACTGCCACTGTCGCCGCCGCCGCCGCCGC
AGCTCCCTCTCTGGCTCGACCCTCCACAAAATCCCAACCCCTTTTTCTCCACCGCCTTCTCCGACCACCCTCCATTATTCTTGCCGGAAAATCAGCAATCTTTCTTTTCC
GAGCCGCTAACGACGACCTCCTCGTACCCGCCGCCACCCCACATGTCCGCCACCGCTCTCCTCCAGAAAGCATCTCAAATGGGGCCCAGCAGAACGCCGCCCACGCCGCC
AATTCTCTTCAACAACACCACCGCCGTCACAGCATATGGAATGAACAACTCCGCCGCCCCTACCGCCGTCTTGTCGGATGGCCGTCCGATGATGAAGCCGATAATGGGTG
GCGCAAAAGAAGAAATTGGAGGGCAGAATTTAACCAGAGACTTCCTCGGCGTCGGAAATCAGGTGGTGCATCTCACGCCGGCGGGATCCAATCAATGCAGTGATCAAAGC
CGCCGCCATTAG
Protein sequenceShow/hide protein sequence
FRQRVDMMSEFDALSGLSTISNLIGQHHPNPNPNPVLVPLKKKRNLPGTPGKPNTLFLQCFPRQLPLSPPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFS
EPLTTTSSYPPPPHMSATALLQKASQMGPSRTPPTPPILFNNTTAVTAYGMNNSAAPTAVLSDGRPMMKPIMGGAKEEIGGQNLTRDFLGVGNQVVHLTPAGSNQCSDQS
RRH