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Carg21128 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21128
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChromatin-remodeling ATPase INO80
Genome locationCarg_Chr07:7996352..7996726
RNA-Seq ExpressionCarg21128
SyntenyCarg21128
Gene Ontology termsGO:0006974 - cellular response to DNA damage stimulus (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0140657 - ATP-dependent activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027640.1 hypothetical protein SDJN02_11655, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-48100Show/hide
Query:  MRTATGNFGQLGFKISKVRRWSRALTISKMNADPQGGGGGGREFPHRLEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRKECQ
        MRTATGNFGQLGFKISKVRRWSRALTISKMNADPQGGGGGGREFPHRLEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRKECQ
Subjt:  MRTATGNFGQLGFKISKVRRWSRALTISKMNADPQGGGGGGREFPHRLEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRKECQ
XP_022925142.1 DNA helicase INO80-like isoform X1 [Cucurbita moschata]7.8e-0556.82Show/hide
Query:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
        L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Subjt:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
XP_022925143.1 DNA helicase INO80-like isoform X2 [Cucurbita moschata]7.8e-0556.82Show/hide
Query:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
        L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Subjt:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
XP_022925146.1 DNA helicase INO80-like isoform X5 [Cucurbita moschata]7.8e-0556.82Show/hide
Query:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
        L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Subjt:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
TrEMBL top hitse value%identityAlignment
A0A6J1EAZ7 Chromatin-remodeling ATPase INO803.8e-0556.82Show/hide
Query:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
        L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Subjt:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
A0A6J1EBE0 Chromatin-remodeling ATPase INO803.8e-0556.82Show/hide
Query:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
        L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Subjt:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
A0A6J1EEE8 Chromatin-remodeling ATPase INO803.8e-0556.82Show/hide
Query:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
        L+ G  A ++  PRR VDTR CA+KDVG RR VDW S+I+W+R+
Subjt:  LEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACTGCAACTGGAAACTTTGGGCAACTTGGTTTTAAGATCTCAAAAGTACGTAGATGGTCTCGAGCACTTACGATCTCGAAGATGAATGCTGACCCCCAAGGGGG
TGGTGGTGGGGGGAGGGAGTTCCCACATCGATTGGAGAAGGGAACGAGTGCTAGAGAGGATGTTGGGCCCCGAAGGGGGGTAGACACGAGGCAGTGTGCCAACAAGGATG
TTGGGTCTCGAAGGGCGGTGGATTGGGGGTCTTACATCGATTGGCAAAGAAAAGAGTGCCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAACTGCAACTGGAAACTTTGGGCAACTTGGTTTTAAGATCTCAAAAGTACGTAGATGGTCTCGAGCACTTACGATCTCGAAGATGAATGCTGACCCCCAAGGGGG
TGGTGGTGGGGGGAGGGAGTTCCCACATCGATTGGAGAAGGGAACGAGTGCTAGAGAGGATGTTGGGCCCCGAAGGGGGGTAGACACGAGGCAGTGTGCCAACAAGGATG
TTGGGTCTCGAAGGGCGGTGGATTGGGGGTCTTACATCGATTGGCAAAGAAAAGAGTGCCAGTGA
Protein sequenceShow/hide protein sequence
MRTATGNFGQLGFKISKVRRWSRALTISKMNADPQGGGGGGREFPHRLEKGTSAREDVGPRRGVDTRQCANKDVGSRRAVDWGSYIDWQRKECQ