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Carg21160 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21160
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCryptochrome DASH
Genome locationCarg_Chr01:10982787..10984142
RNA-Seq ExpressionCarg21160
SyntenyCarg21160
Gene Ontology termsGO:0000719 - photoreactive repair (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003913 - DNA photolyase activity (molecular function)
GO:0071949 - FAD binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037552.1 hypothetical protein SDJN02_01180, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-58100Show/hide
Query:  MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAG
        MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAG
Subjt:  MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAG

Query:  LSRIYEYTSGRRIYYG
        LSRIYEYTSGRRIYYG
Subjt:  LSRIYEYTSGRRIYYG

XP_022142772.1 cryptochrome DASH, chloroplastic/mitochondrial [Momordica charantia]7.1e-0891.43Show/hide
Query:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV
        GLESEEMDRIAEQ+FRRYSSPSSSG+KRGKGVA+V
Subjt:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV

XP_022941135.1 uncharacterized protein LOC111446523 isoform X1 [Cucurbita moschata]1.5e-5089.08Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG
        MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG

Query:  R-------------RIYYG
        R             RIYYG
Subjt:  R-------------RIYYG

XP_022941136.1 uncharacterized protein LOC111446523 isoform X2 [Cucurbita moschata]2.5e-53100Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG
        MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG

Query:  RRIYYG
        RRIYYG
Subjt:  RRIYYG

XP_022982494.1 cryptochrome DASH, chloroplastic/mitochondrial-like [Cucurbita maxima]1.4e-1145.11Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVC---------SEMTSVCWTMRLCIRP---------------GF------RPRLCCRCIPLI------QDLL
        MDRIAEQLFRRYSSPSSSGVKRGKG+ALV          SE     W     + P               GF      R +    C+ L       +   
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVC---------SEMTSVCWTMRLCIRP---------------GF------RPRLCCRCIPLI------QDLL

Query:  VLPATSDFLELE-VVKGMRFIGGEKAGLSRIYE
        +LP+ +  L    VVKGMRFIGGEKAGLSRIYE
Subjt:  VLPATSDFLELE-VVKGMRFIGGEKAGLSRIYE

TrEMBL top hitse value%identityAlignment
A0A6J1CNT8 Cryptochrome DASH3.4e-0891.43Show/hide
Query:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV
        GLESEEMDRIAEQ+FRRYSSPSSSG+KRGKGVA+V
Subjt:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV

A0A6J1F6T7 Cryptochrome DASH3.4e-0883.78Show/hide
Query:  MRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
        MR CIRPGFR RLCCRCI LI+D LVLPATSDFL+LE
Subjt:  MRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE

A0A6J1FKA6 uncharacterized protein LOC111446523 isoform X21.2e-53100Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG
        MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG

Query:  RRIYYG
        RRIYYG
Subjt:  RRIYYG

A0A6J1FSP3 uncharacterized protein LOC111446523 isoform X17.3e-5189.08Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG
        MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG

Query:  R-------------RIYYG
        R             RIYYG
Subjt:  R-------------RIYYG

A0A6J1J4Q9 cryptochrome DASH, chloroplastic/mitochondrial-like6.7e-1245.11Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVC---------SEMTSVCWTMRLCIRP---------------GF------RPRLCCRCIPLI------QDLL
        MDRIAEQLFRRYSSPSSSGVKRGKG+ALV          SE     W     + P               GF      R +    C+ L       +   
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVC---------SEMTSVCWTMRLCIRP---------------GF------RPRLCCRCIPLI------QDLL

Query:  VLPATSDFLELE-VVKGMRFIGGEKAGLSRIYE
        +LP+ +  L    VVKGMRFIGGEKAGLSRIYE
Subjt:  VLPATSDFLELE-VVKGMRFIGGEKAGLSRIYE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTCTTCGGGTGTTAAAAGAGGAAAAGGAGTCGC
CCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTTGCCGGTGTATTCCGCTGATCCAAGATCTTC
TGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGGTTGTTAAGGGCATGAGGTTCATTGGGGGCGAGAAAGCAGGTCTCTCCAGAATTTATGAGTACACTTCTGGA
AGAAGGATTTACTACGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTCTTCGGGTGTTAAAAGAGGAAAAGGAGTCGC
CCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTTGCCGGTGTATTCCGCTGATCCAAGATCTTC
TGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGGTTGTTAAGGGCATGAGGTTCATTGGGGGCGAGAAAGCAGGTCTCTCCAGAATTTATGAGTACACTTCTGGA
AGAAGGATTTACTACGGATGAGGAAACAAGCAATCAATGGGATGTTAGAACCTGGCTACGCTACAAAATGTTGAGGATTATCGAAAGGAGTAGTCCCACGTTGGCCAGTC
CGAAGAGATGAGCGTTACTTCAGTATCCCCAAGCAAGTAAGTGCAGATTTTCTTCTGAATGAATTTTGTTCATTATAAAAGTTTTGCCAAGCGAATAGCCGTTCTTAAGG
TTCTAGACAATGCAAATCTATTTTCTAAGAACACATTTTTATTCT
Protein sequenceShow/hide protein sequence
MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEVVKGMRFIGGEKAGLSRIYEYTSG
RRIYYG