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Carg21173 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21173
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr01:11048544..11051298
RNA-Seq ExpressionCarg21173
SyntenyCarg21173
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608207.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]4.3e-1390.7Show/hide
Query:  KTLLGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        K L  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYG LLKG
Subjt:  KTLLGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

KAG7024513.1 Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma]6.4e-1740.12Show/hide
Query:  MVSFS-VSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTL-------------------------------------------
        MVSFS + SAL TT+GEDA  R+I+LSS G   IR +ERIFL  S  HG  PA   L                                           
Subjt:  MVSFS-VSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTL-------------------------------------------

Query:  ----------------LGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
                        + EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Subjt:  ----------------LGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA

KAG7037564.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-58100Show/hide
Query:  MVSFSVSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTLLGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGIL
        MVSFSVSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTLLGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGIL
Subjt:  MVSFSVSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTLLGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGIL

Query:  KDVHDEAKFEQDFKA
        KDVHDEAKFEQDFKA
Subjt:  KDVHDEAKFEQDFKA

XP_011652532.1 pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Cucumis sativus]1.3e-0969.39Show/hide
Query:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Subjt:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA

XP_022936929.1 pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Cucurbita moschata]1.3e-0969.39Show/hide
Query:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Subjt:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA

TrEMBL top hitse value%identityAlignment
A0A0A0LHF8 Uncharacterized protein6.2e-1069.39Show/hide
Query:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Subjt:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA

A0A6J1CDP2 pentatricopeptide repeat-containing protein At5g10690 isoform X18.1e-1073.47Show/hide
Query:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
        EAC HCGDIDLA +   EMSKP+NCGVDNVSYGTLLKG G  + V DEA
Subjt:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA

A0A6J1CDX0 pentatricopeptide repeat-containing protein At5g10690 isoform X28.1e-1073.47Show/hide
Query:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
        EAC HCGDIDLA +   EMSKP+NCGVDNVSYGTLLKG G  + V DEA
Subjt:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA

A0A6J1F9Q1 pentatricopeptide repeat-containing protein At5g10690 isoform X26.2e-1069.39Show/hide
Query:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Subjt:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA

A0A6J1FEL4 pentatricopeptide repeat-containing protein At5g10690 isoform X16.2e-1069.39Show/hide
Query:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG G  + + DEA
Subjt:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA

SwissProt top hitse value%identityAlignment
Q8VYD6 Pentatricopeptide repeat-containing protein At5g106902.8e-0753.06Show/hide
Query:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
        EAC HCG+IDLA +   EM++P   GVD++SY T+LKG G  + + DEA
Subjt:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA

Arabidopsis top hitse value%identityAlignment
AT5G10690.1 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein2.0e-0853.06Show/hide
Query:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA
        EAC HCG+IDLA +   EM++P   GVD++SY T+LKG G  + + DEA
Subjt:  EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAGCTTCTCTGTCTCATCGGCACTCATAACCACCGTCGGAGAAGATGCTACGGGTCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGA
ACGTATCTTCTTGTCCGACTCCTTAATGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAGAATT
CCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGGTTTTGGGATTCTGAAAGATGTCCATGATGAAGCTAAATTTGAA
CAGGATTTCAAGGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAGCTTCTCTGTCTCATCGGCACTCATAACCACCGTCGGAGAAGATGCTACGGGTCGCCTCATTATTCTATCCTCCATTGGCTTTATGCTTATCCGATTCCACGA
ACGTATCTTCTTGTCCGACTCCTTAATGCACGGCCACTGCCCGGCCGGGAAGACTCTCCTCGGAGAAGCCTGTGCTCACTGCGGTGATATTGATTTAGCTCCGAAGAATT
CCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGGTTTTGGGATTCTGAAAGATGTCCATGATGAAGCTAAATTTGAA
CAGGATTTCAAGGCCTGA
Protein sequenceShow/hide protein sequence
MVSFSVSSALITTVGEDATGRLIILSSIGFMLIRFHERIFLSDSLMHGHCPAGKTLLGEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKGFGILKDVHDEAKFE
QDFKA