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Carg21202 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21202
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPeptide chain release factor 1
Genome locationCarg_Chr18:7141856..7146989
RNA-Seq ExpressionCarg21202
SyntenyCarg21202
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012694.1 hypothetical protein SDJN02_25447, partial [Cucurbita argyrosperma subsp. argyrosperma]6.3e-81100Show/hide
Query:  MDWRSESMDLEEIERDDTTPGKETGGNRERIRARFWLHRPAFRSQYLLVRGLAFFHTTLPPRDLRNKSDMGINRATVGLVHHSDPSPHIGAQILHHSSPF
        MDWRSESMDLEEIERDDTTPGKETGGNRERIRARFWLHRPAFRSQYLLVRGLAFFHTTLPPRDLRNKSDMGINRATVGLVHHSDPSPHIGAQILHHSSPF
Subjt:  MDWRSESMDLEEIERDDTTPGKETGGNRERIRARFWLHRPAFRSQYLLVRGLAFFHTTLPPRDLRNKSDMGINRATVGLVHHSDPSPHIGAQILHHSSPF

Query:  RLQLFVFVLQYAIEEAMQGQNLDMFVDALLLNSSLHVLRSGSEDAREERCIT
        RLQLFVFVLQYAIEEAMQGQNLDMFVDALLLNSSLHVLRSGSEDAREERCIT
Subjt:  RLQLFVFVLQYAIEEAMQGQNLDMFVDALLLNSSLHVLRSGSEDAREERCIT
XP_022967111.1 uncharacterized protein LOC111466613 isoform X1 [Cucurbita maxima]3.9e-2261.32Show/hide
Query:  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ-----------------------------YAIEEAMQGQNLDMFVDALLLNSSLHVLRS
        MGINRATVG+VHHSDPS HIGAQILHHSSPF L+LFVFVLQ                             + +    QGQNLDMFVDALLLN SLHVLRS
Subjt:  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ-----------------------------YAIEEAMQGQNLDMFVDALLLNSSLHVLRS

Query:  GSEDAR
        GSEDAR
Subjt:  GSEDAR
XP_022967112.1 uncharacterized protein LOC111466613 isoform X2 [Cucurbita maxima]3.9e-2261.32Show/hide
Query:  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ-----------------------------YAIEEAMQGQNLDMFVDALLLNSSLHVLRS
        MGINRATVG+VHHSDPS HIGAQILHHSSPF L+LFVFVLQ                             + +    QGQNLDMFVDALLLN SLHVLRS
Subjt:  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ-----------------------------YAIEEAMQGQNLDMFVDALLLNSSLHVLRS

Query:  GSEDAR
        GSEDAR
Subjt:  GSEDAR
TrEMBL top hitse value%identityAlignment
A0A6J1HPV4 uncharacterized protein LOC111466613 isoform X21.9e-2261.32Show/hide
Query:  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ-----------------------------YAIEEAMQGQNLDMFVDALLLNSSLHVLRS
        MGINRATVG+VHHSDPS HIGAQILHHSSPF L+LFVFVLQ                             + +    QGQNLDMFVDALLLN SLHVLRS
Subjt:  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ-----------------------------YAIEEAMQGQNLDMFVDALLLNSSLHVLRS

Query:  GSEDAR
        GSEDAR
Subjt:  GSEDAR
A0A6J1HR48 uncharacterized protein LOC111466613 isoform X11.9e-2261.32Show/hide
Query:  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ-----------------------------YAIEEAMQGQNLDMFVDALLLNSSLHVLRS
        MGINRATVG+VHHSDPS HIGAQILHHSSPF L+LFVFVLQ                             + +    QGQNLDMFVDALLLN SLHVLRS
Subjt:  MGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ-----------------------------YAIEEAMQGQNLDMFVDALLLNSSLHVLRS

Query:  GSEDAR
        GSEDAR
Subjt:  GSEDAR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47020.1 Peptide chain release factor 16.7e-0451.35Show/hide
Query:  VFVLQYAIEEAMQGQNLDMFVDALLLNSSLHVLRSGS
        V +  +AIE+ MQG+NLDMF+DALLL   +  + S S
Subjt:  VFVLQYAIEEAMQGQNLDMFVDALLLNSSLHVLRSGS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGGAGATCAGAAAGTATGGATTTAGAGGAAATTGAGAGAGATGATACGACACCTGGGAAGGAGACGGGCGGGAACCGGGAGAGAATCCGAGCAAGATTCTGGCT
TCATCGCCCTGCATTTCGATCTCAATATCTCCTTGTCCGTGGTCTCGCCTTCTTCCACACAACACTTCCTCCTAGGGATTTGAGAAACAAGAGCGATATGGGAATCAATC
GAGCTACTGTAGGGCTTGTTCATCACTCCGATCCCTCGCCCCACATTGGCGCACAAATCCTGCATCATTCGAGCCCGTTTCGGCTCCAACTTTTCGTTTTTGTTCTTCAG
TATGCCATTGAGGAAGCAATGCAGGGGCAGAATCTGGATATGTTCGTGGACGCTCTGTTATTGAATTCTTCACTTCATGTTCTTCGTAGTGGCAGTGAAGACGCAAGAGA
AGAGCGTTGCATCACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTGGAGATCAGAAAGTATGGATTTAGAGGAAATTGAGAGAGATGATACGACACCTGGGAAGGAGACGGGCGGGAACCGGGAGAGAATCCGAGCAAGATTCTGGCT
TCATCGCCCTGCATTTCGATCTCAATATCTCCTTGTCCGTGGTCTCGCCTTCTTCCACACAACACTTCCTCCTAGGGATTTGAGAAACAAGAGCGATATGGGAATCAATC
GAGCTACTGTAGGGCTTGTTCATCACTCCGATCCCTCGCCCCACATTGGCGCACAAATCCTGCATCATTCGAGCCCGTTTCGGCTCCAACTTTTCGTTTTTGTTCTTCAG
TATGCCATTGAGGAAGCAATGCAGGGGCAGAATCTGGATATGTTCGTGGACGCTCTGTTATTGAATTCTTCACTTCATGTTCTTCGTAGTGGCAGTGAAGACGCAAGAGA
AGAGCGTTGCATCACGTAG
Protein sequenceShow/hide protein sequence
MDWRSESMDLEEIERDDTTPGKETGGNRERIRARFWLHRPAFRSQYLLVRGLAFFHTTLPPRDLRNKSDMGINRATVGLVHHSDPSPHIGAQILHHSSPFRLQLFVFVLQ
YAIEEAMQGQNLDMFVDALLLNSSLHVLRSGSEDAREERCIT