CuGenDBv2

Gene ID	Carg21233
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L17
Genome location	Carg_Chr18:7786818..7787608
RNA-Seq Expression	Carg21233
Synteny	Carg21233
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001063 - Ribosomal protein L22/L17 IPR005721 - Ribosomal protein L22/L17, eukaryotic/archaeal IPR018260 - Ribosomal protein L22/L17, conserved site IPR036394 - Ribosomal protein L22/L17 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6573648.1 60S ribosomal protein L17-1, partial [Cucurbita argyrosperma subsp. sororia]

8.8e-78

99.35

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSG
        RRTYRAHGRINPYMSSPCHIELILSEKEE VKKEPETQLATSNKSKKGQALRSG
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSG

KAG7012735.1 60S ribosomal protein L17-1, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.4e-80

100

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
        RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

XP_008446047.1 PREDICTED: 60S ribosomal protein L17-2 [Cucumis melo]

5.7e-77

98.73

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
        RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATS KSKK QALRSGASS
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

XP_022945920.1 60S ribosomal protein L17-2 [Cucurbita moschata]

1.2e-77

99.36

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
        RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATS KSKKGQALRSGASS
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

XP_022956721.1 60S ribosomal protein L17-2-like [Cucurbita moschata]

4.8e-76

96.82

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL+NAESNAEVKGLDVDSLI+SHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
        RRTYRAHGRINPYMSSPCHIELILSEK+EPVKKEPETQLATS KSKK QALRSGASS
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPZ4 Uncharacterized protein

2.8e-77

98.73

Show/hide

Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
        RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATS KSKK QALRSGASS
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

A0A1S3BDN4 60S ribosomal protein L17-2

2.8e-77

98.73

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
        RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATS KSKK QALRSGASS
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

A0A5A7STA3 60S ribosomal protein L17-2

2.8e-77

98.73

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
        RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATS KSKK QALRSGASS
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

A0A6J1G2C7 60S ribosomal protein L17-2

5.6e-78

99.36

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
        RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATS KSKKGQALRSGASS
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

A0A6J1HQT9 60S ribosomal protein L17-2-like

5.6e-78

99.36

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS
        RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATS KSKKGQALRSGASS
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

SwissProt top hits

e value

%identity

Alignment

O48557 60S ribosomal protein L17

4.3e-67

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETA ALRKLPL KAKRYLEDV+AHKQAIPFRR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD+L VSHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA
        RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA

P35266 60S ribosomal protein L17-1

4.0e-65

87.14

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETA ALRK+PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD+L +SHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA
        RRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA

P35267 60S ribosomal protein L17-2

9.8e-64

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETA ALR++PL KAKRYLEDVLAHKQAIPFRR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQAQKQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA
        RRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA

P51413 60S ribosomal protein L17-2

2.7e-69

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQA
        RRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA   KSKK  A
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQA

Q93VI3 60S ribosomal protein L17-1

1.2e-69

89.19

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKG
        RRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA   KSKKG
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKG

Arabidopsis top hits

e value

%identity

Alignment

AT1G27400.1 Ribosomal protein L22p/L17e family protein

8.5e-71

89.19

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKG
        RRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA   KSKKG
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKG

AT1G67430.1 Ribosomal protein L22p/L17e family protein

1.9e-70

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD+L +SHIQVNQA KQR
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQA
        RRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA   KSKK  A
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQA

AT1G67430.2 Ribosomal protein L22p/L17e family protein

2.3e-39

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Query:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR
        NTRETAHA+RKLPL KAKRYLEDV+AHKQAIPF RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNA                        
Subjt:  NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQR

Query:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQA
                            ELILSEKEEPVKKEPETQLA   KSKK  A
Subjt:  RRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

AATACAAGAGAGACTGCGCACGCCCTTAGGAAGTTGCCCTTGGCCAAGGCAAAGAGGTATTTGGAGGATGTTCTTGCCCACAAGCAGGCTATTCCATTCCGACGTTTCTG
CGGAGGAGTTGGACGAACTGCTCAGGCAAAAAATAGGCACTCAAATGGTCAAGGACGCTGGCCTGTTAAGTCTGCAAAATTCATTCTAGATCTTCTTAAGAATGCCGAGA
GTAATGCCGAAGTGAAAGGACTGGACGTTGATTCTCTCATTGTATCCCACATCCAGGTGAATCAAGCACAAAAACAAAGACGCCGTACCTACCGTGCTCACGGAAGAATT
AACCCCTATATGTCATCTCCATGCCACATCGAGCTTATTTTGTCAGAAAAGGAAGAACCTGTGAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAATAAAAGCAAGAA
GGGTCAAGCTCTCCGCAGTGGTGCTTCATCCTGA

mRNA sequence

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Protein sequence

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NTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDSLIVSHIQVNQAQKQRRRTYRAHGRI
NPYMSSPCHIELILSEKEEPVKKEPETQLATSNKSKKGQALRSGASS

Carg21233 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome