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Carg21250 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21250
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionATP-binding cassette containing protein
Genome locationCarg_Chr18:7896731..7897453
RNA-Seq ExpressionCarg21250
SyntenyCarg21250
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0042626 - ATPase-coupled transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012752.1 hypothetical protein SDJN02_25505, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-29100Show/hide
Query:  MILISSCSKTRMFVVLKMMEVSLVLDSGVKFCSSPLITRILKLHSWEHTFCKEVLQLRKFKRSWLKRYLYR
        MILISSCSKTRMFVVLKMMEVSLVLDSGVKFCSSPLITRILKLHSWEHTFCKEVLQLRKFKRSWLKRYLYR
Subjt:  MILISSCSKTRMFVVLKMMEVSLVLDSGVKFCSSPLITRILKLHSWEHTFCKEVLQLRKFKRSWLKRYLYR

XP_022997171.1 putative ABC transporter C family member 15 [Cucurbita maxima]1.5e-0565.22Show/hide
Query:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY
        DS +K  S  L   R+LKLHSWE TF K+VLQLR+ +RSWLKRYLY
Subjt:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY

XP_023512574.1 putative ABC transporter C family member 15 [Cucurbita pepo subsp. pepo]1.5e-0565.22Show/hide
Query:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY
        DS +K  S  L   R+LKLHSWE TF K+VLQLR+ +RSWLKRYLY
Subjt:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY

XP_023512586.1 ABC transporter C family member 3-like isoform X1 [Cucurbita pepo subsp. pepo]1.5e-0565.22Show/hide
Query:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY
        DS +K  S  L   R+LKLHSWE TF K+VLQLR+ +RSWLKRYLY
Subjt:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY

XP_023512595.1 ABC transporter C family member 3-like isoform X2 [Cucurbita pepo subsp. pepo]1.5e-0565.22Show/hide
Query:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY
        DS +K  S  L   R+LKLHSWE TF K+VLQLR+ +RSWLKRYLY
Subjt:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY

TrEMBL top hitse value%identityAlignment
A0A2P5CUN5 ATP-binding cassette containing protein1.3e-0558.18Show/hide
Query:  KMMEVSLVLDSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY
        K+ME     DS +K  S  L + R+LKLHSWE TF K++L+LRK +RSWLKRYLY
Subjt:  KMMEVSLVLDSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY

A0A2P5EB85 ATP-binding cassette containing protein1.7e-0558.18Show/hide
Query:  KMMEVSLVLDSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY
        K+ME     DS +K  S  L + R+LKLHSWE TF K++L+LRK +RSWLKRYLY
Subjt:  KMMEVSLVLDSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY

A0A2P6R0R9 Putative xenobiotic-transporting ATPase9.8e-0660Show/hide
Query:  KMMEVSLVLDSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY
        KMME     DS +K  S  L + R+LKLHSWE TF K++LQLR+ +RSWLKRYLY
Subjt:  KMMEVSLVLDSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY

A0A6J1H0K9 putative ABC transporter C family member 157.5e-0665.22Show/hide
Query:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY
        DS +K  S  L   R+LKLHSWE TF K+VLQLR+ +RSWLKRYLY
Subjt:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY

A0A6J1K6R8 putative ABC transporter C family member 157.5e-0665.22Show/hide
Query:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY
        DS +K  S  L   R+LKLHSWE TF K+VLQLR+ +RSWLKRYLY
Subjt:  DSGVKFCSSPLIT-RILKLHSWEHTFCKEVLQLRKFKRSWLKRYLY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTAATAAGTTCTTGCTCCAAAACGAGAATGTTTGTTGTTCTTAAGATGATGGAGGTTTCATTAGTCCTGGATTCTGGAGTCAAATTTTGTTCTTCTCCTCTGAT
AACTCGAATCTTGAAATTGCATTCTTGGGAACATACATTTTGTAAGGAAGTCTTACAACTTAGAAAATTCAAAAGAAGCTGGTTGAAGAGATACCTCTATAGA
mRNA sequenceShow/hide mRNA sequence
AAACCTAATGATCTTAATAAGTTCTTGCTCCAAAACGAGAATGTTTGTTGTTCTTAAGATGATGGAGGTTTCATTAGTCCTGGATTCTGGAGTCAAATTTTGTTCTTCTC
CTCTGATAACTCGAATCTTGAAATTGCATTCTTGGGAACATACATTTTGTAAGGAAGTCTTACAACTTAGAAAATTCAAAAGAAGCTGGTTGAAGAGATACCTCTATAGA
Protein sequenceShow/hide protein sequence
MILISSCSKTRMFVVLKMMEVSLVLDSGVKFCSSPLITRILKLHSWEHTFCKEVLQLRKFKRSWLKRYLYR