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Carg21256 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21256
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
Genome locationCarg_Chr18:7921777..7922058
RNA-Seq ExpressionCarg21256
SyntenyCarg21256
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0004386 - helicase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573671.1 E3 ubiquitin-protein ligase AIRP2, partial [Cucurbita argyrosperma subsp. sororia]3.2e-2991.67Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

KAG7012758.1 hypothetical protein SDJN02_25511, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-44100Show/hide
Query:  MLVCLLHYRNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVVRVKCIEGNPDSTCK
        MLVCLLHYRNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVVRVKCIEGNPDSTCK
Subjt:  MLVCLLHYRNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVVRVKCIEGNPDSTCK

XP_022945193.1 RING-H2 finger protein ATL47-like [Cucurbita moschata]3.2e-2991.67Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

XP_022967134.1 RING-H2 finger protein ATL47 [Cucurbita maxima]3.2e-2991.67Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

XP_023542538.1 RING-H2 finger protein ATL47-like [Cucurbita pepo subsp. pepo]3.2e-2991.67Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

TrEMBL top hitse value%identityAlignment
A0A0A0KPZ5 RING-type domain-containing protein8.4e-2886.11Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKED L+FHRYINSLPKDYPDALF+V
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

A0A5D3CUV6 E3 ubiquitin-protein ligase RNF8-B8.4e-2886.11Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVD ETVSKED L+FHRYINSLPKDYPDALF+V
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

A0A6J1DEP0 putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 14.9e-2887.5Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTC+DDVVDAET SKED LRFHRYINSLPKDYPDALFVV
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

A0A6J1G051 RING-H2 finger protein ATL47-like1.5e-2991.67Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

A0A6J1HVW5 RING-H2 finger protein ATL471.5e-2991.67Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

SwissProt top hitse value%identityAlignment
Q9M022 E3 ubiquitin-protein ligase AIRP29.6e-1354.84Show/hide
Query:  VCLLHYRN--TRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLP
        +C+  YRN   RS+SCPFCRGSLKRVNS DLW+ TCS ++ D   + KE+  R   YI+ LP
Subjt:  VCLLHYRN--TRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLP

Arabidopsis top hitse value%identityAlignment
AT1G13195.1 RING/U-box superfamily protein1.2e-2368.06Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  N +S+SCPFCRGS+KRVNSEDLWVL   +DVVD  T S+ED  RF+ YINSLPKDYP+ALFVV
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

AT1G13195.2 RING/U-box superfamily protein1.2e-2368.06Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  N +S+SCPFCRGS+KRVNSEDLWVL   +DVVD  T S+ED  RF+ YINSLPKDYP+ALFVV
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

AT1G24440.1 RING/U-box superfamily protein1.2e-2673.61Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV
        +C+  YR  NT+SESCPFCRGS+KRVNSEDLWVLTC +DVVD ETV+KED LRF+ +INSLPKDYP+A F+V
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVV

AT3G47160.1 RING/U-box superfamily protein9.9e-1350Show/hide
Query:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALF
        +C+  YR  + RSESCPFCR SLKRVNS DLW+L    D V+  T+ +E+  R   YI  LP   PD +F
Subjt:  VCLLHYR--NTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALF

AT5G01520.1 RING/U-box superfamily protein6.9e-1454.84Show/hide
Query:  VCLLHYRN--TRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLP
        +C+  YRN   RS+SCPFCRGSLKRVNS DLW+ TCS ++ D   + KE+  R   YI+ LP
Subjt:  VCLLHYRN--TRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTTTGTCTCCTACATTACAGGAACACGAGGTCGGAGTCCTGCCCGTTTTGTCGTGGCAGCTTGAAGAGAGTCAACTCGGAGGACTTATGGGTGCTCACTTGTAG
TGATGATGTGGTTGATGCCGAAACCGTTTCGAAGGAGGACACGTTGCGCTTCCATCGCTATATAAACAGCTTGCCAAAAGACTATCCGGACGCGCTGTTCGTAGTTCGAG
TAAAGTGTATAGAGGGAAATCCCGACTCGACATGTAAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTTTGTCTCCTACATTACAGGAACACGAGGTCGGAGTCCTGCCCGTTTTGTCGTGGCAGCTTGAAGAGAGTCAACTCGGAGGACTTATGGGTGCTCACTTGTAG
TGATGATGTGGTTGATGCCGAAACCGTTTCGAAGGAGGACACGTTGCGCTTCCATCGCTATATAAACAGCTTGCCAAAAGACTATCCGGACGCGCTGTTCGTAGTTCGAG
TAAAGTGTATAGAGGGAAATCCCGACTCGACATGTAAA
Protein sequenceShow/hide protein sequence
MLVCLLHYRNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVVRVKCIEGNPDSTCK