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Carg21266 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg21266
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionArabinogalactan protein
Genome locationCarg_Chr15:9008623..9009495
RNA-Seq ExpressionCarg21266
SyntenyCarg21266
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]1.9e-2797.26Show/hide
Query:  MAVVANKIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        MAVVANKIPFGVF GVVFVLAM+LPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
Subjt:  MAVVANKIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

KAG7017004.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]2.3e-28100Show/hide
Query:  MAVVANKIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        MAVVANKIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
Subjt:  MAVVANKIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

XP_004143956.1 arabinogalactan protein 41 [Cucumis sativus]7.6e-1673.97Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA K+PF G+ F V  VL  +  A AQSL+PAQPPA  DGTSIDQGIAYVLMLLALVLTYIIHSADL +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

XP_008437371.1 PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]1.8e-1776.71Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA KIPF G+ F V  VL  + PACAQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSAD  +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

XP_023532560.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]2.2e-1572Show/hide
Query:  MAVVA-NKIPFGVFFGVVFVLAMILPACA--QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        M VVA NK+P+GV   V FVLAM+ PA A   SL+PAQPP ASDGTS+DQGIAYVLMLLAL+LTYIIH A+L IS
Subjt:  MAVVA-NKIPFGVFFGVVFVLAMILPACA--QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein3.7e-1673.97Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA K+PF G+ F V  VL  +  A AQSL+PAQPPA  DGTSIDQGIAYVLMLLALVLTYIIHSADL +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A1S3ATI9 arabinogalactan peptide 22-like8.8e-1876.71Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA KIPF G+ F V  VL  + PACAQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSAD  +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A5D3C2F1 Arabinogalactan peptide 22-like8.8e-1876.71Show/hide
Query:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA KIPF G+ F V  VL  + PACAQSL+PAQPPA SDGTSIDQGIAY LMLLALVLTYIIHSAD  +S
Subjt:  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A6J1CXM0 arabinogalactan peptide 22-like1.9e-1263.29Show/hide
Query:  MAVVANKIPFGVF--FGVVFVLAMILPACA----QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        +  V N +P G+     V FVL   LP  A    +S++PAQP A SDGTSIDQGIAY LMLLALVLTYIIHSADLSISF
Subjt:  MAVVANKIPFGVF--FGVVFVLAMILPACA----QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

A0A6J1K4A3 arabinogalactan peptide 22-like9.1e-1570.67Show/hide
Query:  MAVVAN-KIPFGVFFGVVFVLAMILPACA--QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        M VVA  K+P+GV   V FVLAM+ PA A   SL+PAQPP ASDGTS+DQGIAYVLMLLAL+LTYIIH A+L IS
Subjt:  MAVVAN-KIPFGVFFGVVFVLAMILPACA--QSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 162.5e-0968.42Show/hide
Query:  FVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        FV A+IL  A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S+
Subjt:  FVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

Q8L9T8 Arabinogalactan protein 419.4e-0962.3Show/hide
Query:  NKIPFGVFFGVVFVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        +++ FGV   V  + A++LP A AQS APA P   SDGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  NKIPFGVFFGVVFVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 224.4e-0647.46Show/hide
Query:  KIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        K P  +    V +  ++LP      +   P   SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  KIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH

Q9M373 Arabinogalactan protein 202.5e-0969.64Show/hide
Query:  FVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        FV A+I P A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  FVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 161.8e-1068.42Show/hide
Query:  FVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        FV A+IL  A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S+
Subjt:  FVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

AT3G61640.1 arabinogalactan protein 201.8e-1069.64Show/hide
Query:  FVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        FV A+I P A AQSLAPA P   SDGTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  FVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

AT5G24105.1 arabinogalactan protein 416.7e-1062.3Show/hide
Query:  NKIPFGVFFGVVFVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        +++ FGV   V  + A++LP A AQS APA P   SDGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  NKIPFGVFFGVVFVLAMILP-ACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 223.1e-0747.46Show/hide
Query:  KIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH
        K P  +    V +  ++LP      +   P   SDGTSIDQGIAYVLM++AL LTY IH
Subjt:  KIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTCTTCTTTGGTGTTGTTTTTGTTTTGGCTATGATTCTCCCTGCTTGTGCTCAATCTCTGGCTCCGGCCCAACCTCC
TGCTGCTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCTTTCTATCAGTTTCT
AA
mRNA sequenceShow/hide mRNA sequence
CAAATGAAGCCCATTGACCATTTCAAACAAACCCCCAAAAAAGAAGCTTTGAAACCAGCGATTTACACGCCATTGCAGTTGCAACGTTAAGGCCTGAGACCAAATGGGCG
CTATAAAATCCAGAGCCTCATTTGATTGAGAGCCACACCGCCATTGCCACGCCGTCGTCGCTGTCTCCGGAACTGTCAACTGGCCGGTGGTCCTCAACCACCCCTCCCTT
TTGACAGCTTCAAATCATCAACTCGGCCTATTTAATCTCTCTCTGCTGCGGCTCTCCGGAGCCCCTGCAGGAGGTTTCGTCTCAACTTCTTCCATTTCTGAGAGACGTTG
CAGAGAGAGATTTCGTTCTTCCATTTCAATTACCTTGTTTTTTCACCTAGAAGCTTCTTCTTCCTTCAACAATGGCGGTCGTTGCTAATAAGATCCCCTTTGGCGTCTTC
TTTGGTGTTGTTTTTGTTTTGGCTATGATTCTCCCTGCTTGTGCTCAATCTCTGGCTCCGGCCCAACCTCCTGCTGCTAGCGATGGGACAAGCATAGACCAGGGGATTGC
CTATGTACTGATGCTGTTGGCCTTGGTGCTCACTTACATTATCCATTCAGCCGACCTTTCTATCAGTTTCTAAATTTCATCCACAAACTAACTAGATTCAGATATCACAG
AGCTGGAATTTAAACATGGGGTTCAAGAATTTATCACGTTCTTTTTTTTTTTTTTTTGCTTTCTGGTTTAATGTCAAGAACTGAGCTTTACATGTAGAAGAATGCAATCA
Protein sequenceShow/hide protein sequence
MAVVANKIPFGVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALVLTYIIHSADLSISF